Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008662A_C01 KMC008662A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568236.1| putative protein; protein id: At5g10730.1, supp... 179 2e-44
emb|CAC08247.1| putative protein [Arabidopsis thaliana] 179 2e-44
gb|AAM64324.1| unknown [Arabidopsis thaliana] 117 8e-26
ref|NP_568323.1| putative protein; protein id: At5g15910.1, supp... 117 8e-26
pir||T51374 hypothetical protein F1N13_50 - Arabidopsis thaliana... 117 8e-26
>ref|NP_568236.1| putative protein; protein id: At5g10730.1, supported by cDNA:
10217., supported by cDNA: gi_13926272, supported by
cDNA: gi_16323237, supported by cDNA: gi_19698948
[Arabidopsis thaliana]
gi|13926273|gb|AAK49607.1|AF372891_1 AT5g10730/MAJ23_90
[Arabidopsis thaliana] gi|16323238|gb|AAL15353.1|
AT5g10730/MAJ23_90 [Arabidopsis thaliana]
gi|19698949|gb|AAL91210.1| putative protein [Arabidopsis
thaliana] gi|21387195|gb|AAM48001.1| unknown protein
[Arabidopsis thaliana] gi|21536539|gb|AAM60871.1|
unknown [Arabidopsis thaliana]
Length = 287
Score = 179 bits (455), Expect = 2e-44
Identities = 86/103 (83%), Positives = 96/103 (92%)
Frame = -2
Query: 567 GKRAAETELLTRFPYGGVILRPGFIHGTRTAGSMKIPLGVIGSPLEMVLQHAKPLTQIPL 388
GKRAAETELLTRF YGG+ILRPGFI+GTR+ GSMKIPLGV GSP+EMVLQ AKPL Q+PL
Sbjct: 182 GKRAAETELLTRFAYGGIILRPGFIYGTRSVGSMKIPLGVFGSPMEMVLQQAKPLNQLPL 241
Query: 387 IGPLLTPPVNVIAVAKVAVRAATEPVFPPGILDVYGIQRYSQQ 259
+GPL TPPVNV +VAKVAVRAAT+PVFPPGI+DV+GIQRYSQQ
Sbjct: 242 VGPLFTPPVNVESVAKVAVRAATDPVFPPGIVDVHGIQRYSQQ 284
>emb|CAC08247.1| putative protein [Arabidopsis thaliana]
Length = 301
Score = 179 bits (455), Expect = 2e-44
Identities = 86/103 (83%), Positives = 96/103 (92%)
Frame = -2
Query: 567 GKRAAETELLTRFPYGGVILRPGFIHGTRTAGSMKIPLGVIGSPLEMVLQHAKPLTQIPL 388
GKRAAETELLTRF YGG+ILRPGFI+GTR+ GSMKIPLGV GSP+EMVLQ AKPL Q+PL
Sbjct: 196 GKRAAETELLTRFAYGGIILRPGFIYGTRSVGSMKIPLGVFGSPMEMVLQQAKPLNQLPL 255
Query: 387 IGPLLTPPVNVIAVAKVAVRAATEPVFPPGILDVYGIQRYSQQ 259
+GPL TPPVNV +VAKVAVRAAT+PVFPPGI+DV+GIQRYSQQ
Sbjct: 256 VGPLFTPPVNVESVAKVAVRAATDPVFPPGIVDVHGIQRYSQQ 298
>gb|AAM64324.1| unknown [Arabidopsis thaliana]
Length = 251
Score = 117 bits (294), Expect = 8e-26
Identities = 59/101 (58%), Positives = 77/101 (75%), Gaps = 1/101 (0%)
Frame = -2
Query: 567 GKRAAETELLTRFPYGGVILRPGFIHGTRTAGSMKIPLGVIGSPLEMVLQ-HAKPLTQIP 391
GKRA E E+L +F G +LRPGFIHGTR GS+K+PL +IG+PLEMVL+ K +T+IP
Sbjct: 149 GKRATEAEILDKFGNRGSVLRPGFIHGTRQVGSIKLPLSLIGAPLEMVLKLLPKEVTKIP 208
Query: 390 LIGPLLTPPVNVIAVAKVAVRAATEPVFPPGILDVYGIQRY 268
+IGPLL PPVNV +VA AV+AA +P F G++DVY I ++
Sbjct: 209 VIGPLLIPPVNVKSVAATAVKAAVDPEFASGVIDVYRILQH 249
>ref|NP_568323.1| putative protein; protein id: At5g15910.1, supported by cDNA:
22994., supported by cDNA: gi_15292960, supported by
cDNA: gi_21280840 [Arabidopsis thaliana]
gi|15292961|gb|AAK93591.1| unknown protein [Arabidopsis
thaliana] gi|21280841|gb|AAM44918.1| unknown protein
[Arabidopsis thaliana]
Length = 269
Score = 117 bits (294), Expect = 8e-26
Identities = 59/101 (58%), Positives = 77/101 (75%), Gaps = 1/101 (0%)
Frame = -2
Query: 567 GKRAAETELLTRFPYGGVILRPGFIHGTRTAGSMKIPLGVIGSPLEMVLQ-HAKPLTQIP 391
GKRA E E+L +F G +LRPGFIHGTR GS+K+PL +IG+PLEMVL+ K +T+IP
Sbjct: 167 GKRATEAEILDKFGNRGSVLRPGFIHGTRQVGSIKLPLSLIGAPLEMVLKLLPKEVTKIP 226
Query: 390 LIGPLLTPPVNVIAVAKVAVRAATEPVFPPGILDVYGIQRY 268
+IGPLL PPVNV +VA AV+AA +P F G++DVY I ++
Sbjct: 227 VIGPLLIPPVNVKSVAATAVKAAVDPEFASGVIDVYRILQH 267
>pir||T51374 hypothetical protein F1N13_50 - Arabidopsis thaliana
gi|9755637|emb|CAC01790.1| putative protein [Arabidopsis
thaliana]
Length = 147
Score = 117 bits (294), Expect = 8e-26
Identities = 59/101 (58%), Positives = 77/101 (75%), Gaps = 1/101 (0%)
Frame = -2
Query: 567 GKRAAETELLTRFPYGGVILRPGFIHGTRTAGSMKIPLGVIGSPLEMVLQ-HAKPLTQIP 391
GKRA E E+L +F G +LRPGFIHGTR GS+K+PL +IG+PLEMVL+ K +T+IP
Sbjct: 45 GKRATEAEILDKFGNRGSVLRPGFIHGTRQVGSIKLPLSLIGAPLEMVLKLLPKEVTKIP 104
Query: 390 LIGPLLTPPVNVIAVAKVAVRAATEPVFPPGILDVYGIQRY 268
+IGPLL PPVNV +VA AV+AA +P F G++DVY I ++
Sbjct: 105 VIGPLLIPPVNVKSVAATAVKAAVDPEFASGVIDVYRILQH 145
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,113,128
Number of Sequences: 1393205
Number of extensions: 10418756
Number of successful extensions: 26103
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 25042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26079
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
