Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008661A_C01 KMC008661A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61747.1| protein phosphatase-2c, putative [Arabidopsis tha... 172 2e-42
ref|NP_566566.1| protein phosphatase-2c, putative; protein id: A... 172 2e-42
dbj|BAA94987.1| protein phosphatase 2C-like protein [Arabidopsis... 172 2e-42
gb|AAL79731.1|AC091774_22 putative protein phosphatase [Oryza sa... 152 3e-36
pir||T51100 protein phosphatase 2C homolog [imported] - common i... 147 6e-35
>gb|AAM61747.1| protein phosphatase-2c, putative [Arabidopsis thaliana]
Length = 384
Score = 172 bits (437), Expect = 2e-42
Identities = 86/107 (80%), Positives = 98/107 (91%), Gaps = 3/107 (2%)
Frame = -3
Query: 545 LQPSDSFLIFASDGLWEHLSNEQAVDIVHSNPRAGSAKRLVKAALQEAARKREMRYSDLR 366
L P+DSFLIFASDGLWEHL+NE+AV+IVH++PRAGSAKRL+KAAL EAARKREMRYSDLR
Sbjct: 278 LHPNDSFLIFASDGLWEHLTNEKAVEIVHNHPRAGSAKRLIKAALHEAARKREMRYSDLR 337
Query: 365 KIDKKVRRHFHDDITVIVLFLNHDLISRG---SVLNPPLSLRSALDH 234
KIDKKVRRHFHDDITVIV+FLNHDLISRG S + +S+RSAL+H
Sbjct: 338 KIDKKVRRHFHDDITVIVVFLNHDLISRGHINSTQDTTVSIRSALEH 384
>ref|NP_566566.1| protein phosphatase-2c, putative; protein id: At3g17090.1,
supported by cDNA: 13755. [Arabidopsis thaliana]
Length = 384
Score = 172 bits (437), Expect = 2e-42
Identities = 86/107 (80%), Positives = 98/107 (91%), Gaps = 3/107 (2%)
Frame = -3
Query: 545 LQPSDSFLIFASDGLWEHLSNEQAVDIVHSNPRAGSAKRLVKAALQEAARKREMRYSDLR 366
L P+DSFLIFASDGLWEHL+NE+AV+IVH++PRAGSAKRL+KAAL EAARKREMRYSDLR
Sbjct: 278 LHPNDSFLIFASDGLWEHLTNEKAVEIVHNHPRAGSAKRLIKAALHEAARKREMRYSDLR 337
Query: 365 KIDKKVRRHFHDDITVIVLFLNHDLISRG---SVLNPPLSLRSALDH 234
KIDKKVRRHFHDDITVIV+FLNHDLISRG S + +S+RSAL+H
Sbjct: 338 KIDKKVRRHFHDDITVIVVFLNHDLISRGHINSTQDTTVSIRSALEH 384
>dbj|BAA94987.1| protein phosphatase 2C-like protein [Arabidopsis thaliana]
Length = 379
Score = 172 bits (437), Expect = 2e-42
Identities = 86/107 (80%), Positives = 98/107 (91%), Gaps = 3/107 (2%)
Frame = -3
Query: 545 LQPSDSFLIFASDGLWEHLSNEQAVDIVHSNPRAGSAKRLVKAALQEAARKREMRYSDLR 366
L P+DSFLIFASDGLWEHL+NE+AV+IVH++PRAGSAKRL+KAAL EAARKREMRYSDLR
Sbjct: 273 LHPNDSFLIFASDGLWEHLTNEKAVEIVHNHPRAGSAKRLIKAALHEAARKREMRYSDLR 332
Query: 365 KIDKKVRRHFHDDITVIVLFLNHDLISRG---SVLNPPLSLRSALDH 234
KIDKKVRRHFHDDITVIV+FLNHDLISRG S + +S+RSAL+H
Sbjct: 333 KIDKKVRRHFHDDITVIVVFLNHDLISRGHINSTQDTTVSIRSALEH 379
>gb|AAL79731.1|AC091774_22 putative protein phosphatase [Oryza sativa]
Length = 392
Score = 152 bits (384), Expect = 3e-36
Identities = 75/100 (75%), Positives = 88/100 (88%), Gaps = 1/100 (1%)
Frame = -3
Query: 545 LQPSDSFLIFASDGLWEHLSNEQAVDIVHSNPRAGSAKRLVKAALQEAARKREMRYSDLR 366
LQP D FLIFASDGLWEHL+N++AVDIVHS+PR GSA+RL+KAALQEAA+KREMRYSDL+
Sbjct: 275 LQPHDQFLIFASDGLWEHLTNQEAVDIVHSSPRNGSARRLIKAALQEAAKKREMRYSDLK 334
Query: 365 KIDKKVRRHFHDDITVIVLFLNHDLISRGSVL-NPPLSLR 249
KID+ VRRHFHDDITVIV+FL+ L+SR S P +SLR
Sbjct: 335 KIDRGVRRHFHDDITVIVVFLDSSLVSRASTYRGPSVSLR 374
>pir||T51100 protein phosphatase 2C homolog [imported] - common ice plant
gi|4206122|gb|AAD11430.1| protein phosphatase 2C homolog
[Mesembryanthemum crystallinum]
Length = 396
Score = 147 bits (372), Expect = 6e-35
Identities = 75/105 (71%), Positives = 87/105 (82%), Gaps = 1/105 (0%)
Frame = -3
Query: 545 LQPSDSFLIFASDGLWEHLSNEQAVDIVHSNPRAGSAKRLVKAALQEAARKREMRYSDLR 366
LQP D IFASDGLWEHL+N++AVD+V +PR GSAKRLVK ALQEAA+KREMRYSDL+
Sbjct: 274 LQPHDQVCIFASDGLWEHLTNQEAVDLVQKSPRNGSAKRLVKVALQEAAKKREMRYSDLK 333
Query: 365 KIDKKVRRHFHDDITVIVLFLNHDLISRG-SVLNPPLSLRSALDH 234
KID+ VRRHFHDDITV+V+FL+ +LISRG SV P LSLR H
Sbjct: 334 KIDRGVRRHFHDDITVVVVFLDSNLISRGSSVRGPTLSLRGGGIH 378
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,605,933
Number of Sequences: 1393205
Number of extensions: 9444824
Number of successful extensions: 26760
Number of sequences better than 10.0: 294
Number of HSP's better than 10.0 without gapping: 26137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26736
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
