Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008657A_C01 KMC008657A_c01
(460 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E96785 protein F10A5.28 [imported] - Arabidopsis thaliana g... 77 6e-14
ref|NP_565111.1| nodulin-like protein; protein id: At1g75500.1, ... 77 6e-14
ref|NP_566981.1| putative protein; protein id: At3g53210.1, supp... 74 7e-13
gb|AAM65079.1| nodulin-like protein [Arabidopsis thaliana] 74 7e-13
ref|NP_188448.1| integral membrane protein, putative; protein id... 74 7e-13
>pir||E96785 protein F10A5.28 [imported] - Arabidopsis thaliana
gi|9369372|gb|AAF87121.1|AC006434_17 F10A5.28
[Arabidopsis thaliana]
Length = 355
Score = 77.4 bits (189), Expect = 6e-14
Identities = 34/58 (58%), Positives = 48/58 (82%)
Frame = -2
Query: 459 GGPVLASIYLPLQTLLVALMSSIVFGEDFFLGGIIGAFLIMTGLYLVVWGRTQETKSA 286
GGPV ++Y P+QTL+VA+M+SI GE+F+LGGIIGA LI+ GLY V++G+++E K A
Sbjct: 257 GGPVFVAVYQPVQTLVVAIMASIALGEEFYLGGIIGAVLIIAGLYFVLYGKSEERKFA 314
>ref|NP_565111.1| nodulin-like protein; protein id: At1g75500.1, supported by cDNA:
gi_15028078, supported by cDNA: gi_20259306 [Arabidopsis
thaliana] gi|15028079|gb|AAK76570.1| putative nodulin
protein [Arabidopsis thaliana]
gi|20259307|gb|AAM14389.1| putative nodulin protein
[Arabidopsis thaliana] gi|23397059|gb|AAN31815.1|
putative nodulin [Arabidopsis thaliana]
Length = 389
Score = 77.4 bits (189), Expect = 6e-14
Identities = 34/58 (58%), Positives = 48/58 (82%)
Frame = -2
Query: 459 GGPVLASIYLPLQTLLVALMSSIVFGEDFFLGGIIGAFLIMTGLYLVVWGRTQETKSA 286
GGPV ++Y P+QTL+VA+M+SI GE+F+LGGIIGA LI+ GLY V++G+++E K A
Sbjct: 291 GGPVFVAVYQPVQTLVVAIMASIALGEEFYLGGIIGAVLIIAGLYFVLYGKSEERKFA 348
>ref|NP_566981.1| putative protein; protein id: At3g53210.1, supported by cDNA:
36442. [Arabidopsis thaliana]
Length = 369
Score = 73.9 bits (180), Expect = 7e-13
Identities = 34/68 (50%), Positives = 50/68 (73%)
Frame = -2
Query: 459 GGPVLASIYLPLQTLLVALMSSIVFGEDFFLGGIIGAFLIMTGLYLVVWGRTQETKSAKE 280
GGP+ S YLPLQTL+ A+++++ GE F+LGG+IGA LIM+GLYLVV G++ E ++ +
Sbjct: 275 GGPLFVSAYLPLQTLIAAVLATLALGEHFYLGGLIGAILIMSGLYLVVMGKSWENQALCQ 334
Query: 279 YMKVPIES 256
+ I S
Sbjct: 335 QQQHMISS 342
>gb|AAM65079.1| nodulin-like protein [Arabidopsis thaliana]
Length = 356
Score = 73.9 bits (180), Expect = 7e-13
Identities = 34/68 (50%), Positives = 50/68 (73%)
Frame = -2
Query: 459 GGPVLASIYLPLQTLLVALMSSIVFGEDFFLGGIIGAFLIMTGLYLVVWGRTQETKSAKE 280
GGP+ S YLPLQTL+ A+++++ GE F+LGG+IGA LIM+GLYLVV G++ E ++ +
Sbjct: 262 GGPLFVSAYLPLQTLIAAVLATLALGEHFYLGGLIGAILIMSGLYLVVMGKSWENQALCQ 321
Query: 279 YMKVPIES 256
+ I S
Sbjct: 322 QQQHMISS 329
>ref|NP_188448.1| integral membrane protein, putative; protein id: At3g18200.1
[Arabidopsis thaliana]
Length = 360
Score = 73.9 bits (180), Expect = 7e-13
Identities = 39/89 (43%), Positives = 55/89 (60%)
Frame = -2
Query: 456 GPVLASIYLPLQTLLVALMSSIVFGEDFFLGGIIGAFLIMTGLYLVVWGRTQETKSAKEY 277
GPV +++ PLQTLLVA M+ ++ G+ + GGI+GA IM GLYLV+WG+ +E K A E
Sbjct: 275 GPVFVAVFQPLQTLLVAAMAFLILGDQLYSGGIVGAVFIMLGLYLVLWGKNEERKLALE- 333
Query: 276 MKVPIESENHPEAKIGSGSLMQQLIPTQN 190
ES+ PE SL + L+ Q+
Sbjct: 334 -----ESQQDPE------SLTKHLLEAQH 351
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 405,644,159
Number of Sequences: 1393205
Number of extensions: 8594288
Number of successful extensions: 37039
Number of sequences better than 10.0: 194
Number of HSP's better than 10.0 without gapping: 35901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37020
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
