Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008654A_C01 KMC008654A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC06871.1| OSJNBa0094H06.13 [Oryza sativa (japonica cultiva... 100 8e-21
ref|NP_565010.1| expressed protein; protein id: At1g71080.1, sup... 95 6e-19
ref|NP_198621.1| putative protein; protein id: At5g38050.1 [Arab... 74 1e-12
ref|NP_595878.1| hypothetical serine-rich repeat protein [Schizo... 52 4e-06
ref|NP_010454.1| Involved in protein transport at multiple stage... 51 7e-06
>dbj|BAC06871.1| OSJNBa0094H06.13 [Oryza sativa (japonica cultivar-group)]
Length = 319
Score = 100 bits (250), Expect = 8e-21
Identities = 59/88 (67%), Positives = 66/88 (74%), Gaps = 3/88 (3%)
Frame = -3
Query: 441 GFDMNIPQT---DDEIADVVDSGDEMDRGTNAAEALRAQVNAEGKDEQTSTSSSSSGSGS 271
GFD+NIP DDEIADV D DE D G NAAEALRAQVNAEG+ ++ T SSSSGS S
Sbjct: 228 GFDINIPNQLDIDDEIADV-DVSDEADEGLNAAEALRAQVNAEGQQDEQET-SSSSGSSS 285
Query: 270 SESGSGSGSRSSSSSSDSEGSDEDTVNS 187
S S SGSGS S SSSSDS+GSD D+ +S
Sbjct: 286 SSSSSGSGSGSGSSSSDSDGSDGDSASS 313
>ref|NP_565010.1| expressed protein; protein id: At1g71080.1, supported by cDNA:
gi_16974549 [Arabidopsis thaliana]
gi|25406100|pir||C96735 unknown protein F23N20.7
[imported] - Arabidopsis thaliana
gi|12323437|gb|AAG51700.1|AC016972_19 unknown protein;
36401-34743 [Arabidopsis thaliana]
gi|16974550|gb|AAL31191.1| At1g71080/F23N20_7
[Arabidopsis thaliana] gi|22137124|gb|AAM91407.1|
At1g71080/F23N20_7 [Arabidopsis thaliana]
Length = 326
Score = 94.7 bits (234), Expect = 6e-19
Identities = 64/132 (48%), Positives = 84/132 (63%), Gaps = 20/132 (15%)
Frame = -3
Query: 519 RDIDIDDLFGIVSPEDDHNVEEKDNVG-----FDMNIPQTDDEIADVVD-SGDEMDRGTN 358
++ID+ ++FG +PE+D+ +E + G + + T++EIADV D SG E ++G N
Sbjct: 196 QEIDLVEIFGSFTPENDNAEKENADGGEYVESLNKQLSMTEEEIADVDDDSGGEGEKGLN 255
Query: 357 AAEALRAQVNAEGKDEQTSTSSSSSGSGSS----------ESGSGSGSRSSSSSSDSEGS 208
AAEALRAQVNAE + QTS+SSSSSGS S SGSGSG +SSS SS S GS
Sbjct: 256 AAEALRAQVNAEVQKSQTSSSSSSSGSSSGSDSDGRSKSVSSGSGSGGQSSSGSS-SRGS 314
Query: 207 ----DEDTVNSI 184
DED VNS+
Sbjct: 315 GGSDDEDEVNSV 326
>ref|NP_198621.1| putative protein; protein id: At5g38050.1 [Arabidopsis thaliana]
gi|8885609|dbj|BAA97539.1|
gb|AAF26010.1~gene_id:F16F17.7~similar to unknown
protein [Arabidopsis thaliana]
Length = 281
Score = 73.6 bits (179), Expect = 1e-12
Identities = 48/116 (41%), Positives = 63/116 (53%), Gaps = 15/116 (12%)
Frame = -3
Query: 513 IDIDDLFGIVSPEDDHNVEEKD----NVGFDMNIPQT----DDEIADVVDSGDEMDRGTN 358
+D ++ I ++ + K+ + D+N+P DDEIA V + DE +G N
Sbjct: 154 VDFEEDVNIEDDNEEETLSRKEFQTGGLDIDINLPHPAEMEDDEIAVVDINDDESYKGLN 213
Query: 357 AAEALRAQVNAEGKDEQTSTSSSSSG-------SGSSESGSGSGSRSSSSSSDSEG 211
AAEALRAQVNAE ++E +SSS SG SG SGSGS S S S S SEG
Sbjct: 214 AAEALRAQVNAEAREESRKSSSSGSGRESESSESGVESSGSGSSSTSESRKSGSEG 269
>ref|NP_595878.1| hypothetical serine-rich repeat protein [Schizosaccharomyces pombe]
gi|7630163|emb|CAB88235.1| hypothetical serine-rich
repeat protein [Schizosaccharomyces pombe]
Length = 451
Score = 52.0 bits (123), Expect = 4e-06
Identities = 33/98 (33%), Positives = 52/98 (52%)
Frame = -3
Query: 480 PEDDHNVEEKDNVGFDMNIPQTDDEIADVVDSGDEMDRGTNAAEALRAQVNAEGKDEQTS 301
PE H+ E G + ++D ++ S ++ D ++++++ +E E +
Sbjct: 93 PEKAHSSSEASGSGSSSD--ESDSSSSESESSSEDNDSSSSSSDS-----ESESSSEDSD 145
Query: 300 TSSSSSGSGSSESGSGSGSRSSSSSSDSEGSDEDTVNS 187
+SSSSS S S S GS S SSSSSS+SE S ED +S
Sbjct: 146 SSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSS 183
Score = 47.8 bits (112), Expect = 8e-05
Identities = 30/102 (29%), Positives = 54/102 (52%)
Frame = -3
Query: 492 GIVSPEDDHNVEEKDNVGFDMNIPQTDDEIADVVDSGDEMDRGTNAAEALRAQVNAEGKD 313
G S E D + E ++ D N + ++ S ++ D ++++++ ++ ++EG D
Sbjct: 106 GSSSDESDSSSSESESSSED-NDSSSSSSDSESESSSEDSDSSSSSSDS-ESESSSEGSD 163
Query: 312 EQTSTSSSSSGSGSSESGSGSGSRSSSSSSDSEGSDEDTVNS 187
+S+SSS S S S ++ S S S S S S SE SD + +S
Sbjct: 164 SSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSS 205
Score = 47.4 bits (111), Expect = 1e-04
Identities = 29/75 (38%), Positives = 38/75 (50%)
Frame = -3
Query: 411 DEIADVVDSGDEMDRGTNAAEALRAQVNAEGKDEQTSTSSSSSGSGSSESGSGSGSRSSS 232
D + S E N + + + +E E + +SSSSS S S S GS S SSS
Sbjct: 163 DSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSS 222
Query: 231 SSSDSEGSDEDTVNS 187
SSS+SE S ED +S
Sbjct: 223 SSSESESSSEDNDSS 237
Score = 43.9 bits (102), Expect = 0.001
Identities = 23/67 (34%), Positives = 41/67 (60%)
Frame = -3
Query: 387 SGDEMDRGTNAAEALRAQVNAEGKDEQTSTSSSSSGSGSSESGSGSGSRSSSSSSDSEGS 208
S ++ D ++++++ ++ ++EG D +S+SSS S S S ++ S S S S S S SE S
Sbjct: 194 SSEDSDSSSSSSDS-ESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDS 252
Query: 207 DEDTVNS 187
D + +S
Sbjct: 253 DSSSSSS 259
Score = 43.5 bits (101), Expect = 0.001
Identities = 29/99 (29%), Positives = 49/99 (49%)
Frame = -3
Query: 483 SPEDDHNVEEKDNVGFDMNIPQTDDEIADVVDSGDEMDRGTNAAEALRAQVNAEGKDEQT 304
S + E + G D + + E S ++ D ++++++ + + +D +
Sbjct: 147 SSSSSDSESESSSEGSDSSSSSSSSESES---SSEDNDSSSSSSDS---ESESSSEDSDS 200
Query: 303 STSSSSSGSGSSESGSGSGSRSSSSSSDSEGSDEDTVNS 187
S+SSS S S SS GS S S SSSS S+S D D+ +S
Sbjct: 201 SSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSS 239
Score = 43.1 bits (100), Expect = 0.002
Identities = 26/78 (33%), Positives = 40/78 (50%)
Frame = -3
Query: 420 QTDDEIADVVDSGDEMDRGTNAAEALRAQVNAEGKDEQTSTSSSSSGSGSSESGSGSGSR 241
+ +D + DS E + + + + +E E + +SSSSS S S S + S
Sbjct: 178 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSS 237
Query: 240 SSSSSSDSEGSDEDTVNS 187
SSSS S+SE S ED+ +S
Sbjct: 238 SSSSDSESESSSEDSDSS 255
Score = 42.7 bits (99), Expect = 0.003
Identities = 28/99 (28%), Positives = 45/99 (45%)
Frame = -3
Query: 483 SPEDDHNVEEKDNVGFDMNIPQTDDEIADVVDSGDEMDRGTNAAEALRAQVNAEGKDEQT 304
S +D++ + + + D + DS E + + + + +E E
Sbjct: 175 SSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDN 234
Query: 303 STSSSSSGSGSSESGSGSGSRSSSSSSDSEGSDEDTVNS 187
+SSSSS S S S S S SSSS S+SE S +D+ +S
Sbjct: 235 DSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSS 273
Score = 41.6 bits (96), Expect = 0.006
Identities = 28/99 (28%), Positives = 44/99 (44%)
Frame = -3
Query: 483 SPEDDHNVEEKDNVGFDMNIPQTDDEIADVVDSGDEMDRGTNAAEALRAQVNAEGKDEQT 304
S +D++ + + + D + DS E + + + + +E E
Sbjct: 121 SSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDN 180
Query: 303 STSSSSSGSGSSESGSGSGSRSSSSSSDSEGSDEDTVNS 187
+SSSSS S S S S S SSSS S+SE S E + +S
Sbjct: 181 DSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSS 219
Score = 40.0 bits (92), Expect = 0.016
Identities = 27/96 (28%), Positives = 49/96 (50%), Gaps = 1/96 (1%)
Frame = -3
Query: 483 SPEDDHNVEEKDNVGFDMNIP-QTDDEIADVVDSGDEMDRGTNAAEALRAQVNAEGKDEQ 307
S E + + E+ D+ + ++ E +D S + + +++ ++ + +++ +D+
Sbjct: 224 SSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDS 283
Query: 306 TSTSSSSSGSGSSESGSGSGSRSSSSSSDSEGSDED 199
+S SS S SSE S S SSSS SDS S ED
Sbjct: 284 SSDSSDSESESSSED---SDSTSSSSDSDSSSSSED 316
Score = 39.3 bits (90), Expect = 0.028
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = -3
Query: 429 NIPQTDDEIADVVDSGDEMDRGTNAAEALRAQVNAEGKDEQTSTS-SSSSGSGSSESGSG 253
++ +++D+ + G ++ +++EA + +++ D +S S SSS + SS S S
Sbjct: 75 SLEKSNDDSQKISKKGAPPEKAHSSSEASGSGSSSDESDSSSSESESSSEDNDSSSSSSD 134
Query: 252 SGSRSSSSSSDSEGSDEDT 196
S S SSS SDS S D+
Sbjct: 135 SESESSSEDSDSSSSSSDS 153
Score = 38.5 bits (88), Expect = 0.048
Identities = 22/67 (32%), Positives = 37/67 (54%)
Frame = -3
Query: 387 SGDEMDRGTNAAEALRAQVNAEGKDEQTSTSSSSSGSGSSESGSGSGSRSSSSSSDSEGS 208
S ++ D ++++++ + + KD +S++SS S SS S S S SSS SDS S
Sbjct: 248 SSEDSDSSSSSSDS---ESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSS 304
Query: 207 DEDTVNS 187
D+ +S
Sbjct: 305 SSDSDSS 311
Score = 37.4 bits (85), Expect = 0.11
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Frame = -3
Query: 390 DSGDEMDRGTNAAEALRAQVNAEGKDEQTSTS-----SSSSGSGSSESGSGSGSRSSSSS 226
+S E ++++ + ++ ++E D +S+S SSS S SS S S S S SSS
Sbjct: 210 ESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKD 269
Query: 225 SDSEGSDEDT 196
SDS + D+
Sbjct: 270 SDSSSNSSDS 279
Score = 36.6 bits (83), Expect = 0.18
Identities = 26/101 (25%), Positives = 42/101 (40%), Gaps = 5/101 (4%)
Frame = -3
Query: 483 SPEDDHNVEEKDNVGFDMNIPQTDDEIADVVDSGDEMDRGTNAAEALRAQVNAEGKDEQT 304
S + E + D + +D E + D +++ ++ N
Sbjct: 183 SSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSD 242
Query: 303 STSSSS-----SGSGSSESGSGSGSRSSSSSSDSEGSDEDT 196
S S SS S S SS+S S S S+ S SSS+S S++D+
Sbjct: 243 SESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDS 283
Score = 35.0 bits (79), Expect = 0.53
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = -3
Query: 420 QTDDEIADVVDSGDEMDRGTNAAEALRAQVNAEGKDEQTSTSSSSSGSGSSESGSGSGSR 241
+ +D + DS E + + + + +E + + +SS+SS S S S S
Sbjct: 232 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSE 291
Query: 240 SSSSSSDSE----GSDEDTVNS 187
S SSS DS+ SD D+ +S
Sbjct: 292 SESSSEDSDSTSSSSDSDSSSS 313
Score = 34.7 bits (78), Expect = 0.69
Identities = 23/78 (29%), Positives = 35/78 (44%)
Frame = -3
Query: 420 QTDDEIADVVDSGDEMDRGTNAAEALRAQVNAEGKDEQTSTSSSSSGSGSSESGSGSGSR 241
+T + + D ++ + E + A G + S SSS S S + S
Sbjct: 71 KTKESLEKSNDDSQKISKKGAPPEKAHSSSEASGSGSSSDESDSSSSE-SESSSEDNDSS 129
Query: 240 SSSSSSDSEGSDEDTVNS 187
SSSS S+SE S ED+ +S
Sbjct: 130 SSSSDSESESSSEDSDSS 147
Score = 34.7 bits (78), Expect = 0.69
Identities = 22/68 (32%), Positives = 34/68 (49%), Gaps = 1/68 (1%)
Frame = -3
Query: 387 SGDEMDRGTNAAEALRAQVNAEGKDEQTSTSSSSSGSGSSESGSGSGSRSSSSSSDSE-G 211
S E + + ++ + ++E + + SSSS S S S S SSS+SSDSE
Sbjct: 223 SSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDD 282
Query: 210 SDEDTVNS 187
S D+ +S
Sbjct: 283 SSSDSSDS 290
Score = 34.3 bits (77), Expect = 0.90
Identities = 28/102 (27%), Positives = 42/102 (40%), Gaps = 6/102 (5%)
Frame = -3
Query: 483 SPEDDHNVEEKDNVGFDMNIPQTDDEIADVVDSGDEMDRGTNAAEALRAQVNAEGKDEQT 304
S + + KD+ + DD +D DS E ++ + T
Sbjct: 258 SSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESE---------------SSSEDSDST 302
Query: 303 STSSSSSGSGSSESGSG------SGSRSSSSSSDSEGSDEDT 196
S+SS S S SSE G+ SG S+ SS++S S+E T
Sbjct: 303 SSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEEST 344
Score = 33.5 bits (75), Expect = 1.5
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -3
Query: 381 DEMDRGTNAAEALRAQVNAEGKDEQTSTSSSSSGSGSSESGSGSGS-RSSSSSSDSEGSD 205
+++ + E+L + K + + S S SGSGS S S SSSS+SE S
Sbjct: 64 EDVGKHKKTKESLEKSNDDSQKISKKGAPPEKAHSSSEASGSGSSSDESDSSSSESESSS 123
Query: 204 EDTVNS 187
ED +S
Sbjct: 124 EDNDSS 129
Score = 32.7 bits (73), Expect = 2.6
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Frame = -3
Query: 483 SPEDDHNVEEKDNVGFDMNIPQTDDEIADVVDSGDEMDRGTNAAEALRAQVNAEGKDEQT 304
S + E + G D + + E +S E + ++++ ++ ++E D +
Sbjct: 201 SSSSSDSESESSSEGSDSSSSSSSSES----ESSSEDNDSSSSSSDSESESSSEDSDSSS 256
Query: 303 STSSSSSGSGSSESGSGSGSRSS----SSSSD---SEGSDEDT 196
S+S S S S S +S S S S S SS S SE S ED+
Sbjct: 257 SSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDS 299
>ref|NP_010454.1| Involved in protein transport at multiple stages of the secretory
pathway; Sec7p [Saccharomyces cerevisiae]
gi|2507125|sp|P11075|SEC7_YEAST Protein transport
protein SEC7 gi|2133128|pir||S49764 SEC7 protein - yeast
(Saccharomyces cerevisiae)
Length = 2009
Score = 51.2 bits (121), Expect = 7e-06
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Frame = -3
Query: 492 GIVSPEDDHNVEEK--DNVGFDMNIPQTDDEIADVVDSGDEMDRGTNAAEALRAQVNAEG 319
G+ +PE+ + +K D+ G D + + +DE D D+GDE D +++ + + + E
Sbjct: 73 GMKTPEETEDTNDKRHDDEGEDGDEDEDEDEDEDE-DNGDEDDEDVDSSSSETSSEDGED 131
Query: 318 KDEQTSTSSSSSGSGSSESGSGSGSRSSSSSSDSEGSDED 199
+ + S+ SS ES G+ S+SSS D GS+E+
Sbjct: 132 SESVSGESTESSSGEDEESDESDGNTSNSSSGDESGSEEE 171
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,039,481
Number of Sequences: 1393205
Number of extensions: 9918480
Number of successful extensions: 140779
Number of sequences better than 10.0: 2542
Number of HSP's better than 10.0 without gapping: 70837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111957
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
