Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008633A_C01 KMC008633A_c01
(490 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_573232.1| CG8211-PA [Drosophila melanogaster] gi|22832746... 35 0.45
dbj|BAB17349.1| P0698G03.33 [Oryza sativa (japonica cultivar-gro... 33 2.2
ref|NP_196896.1| putative protein; protein id: At5g13920.1 [Arab... 32 3.8
gb|AAK82634.1| cytochrome c oxidase subunit II [Aphodius quadrim... 32 3.8
gb|AAK82636.1| cytochrome c oxidase subunit II [Aphodius constans] 32 5.0
>ref|NP_573232.1| CG8211-PA [Drosophila melanogaster] gi|22832746|gb|AAF48750.2|
CG8211-PA [Drosophila melanogaster]
Length = 1105
Score = 35.0 bits (79), Expect = 0.45
Identities = 27/113 (23%), Positives = 50/113 (43%), Gaps = 22/113 (19%)
Frame = +3
Query: 84 LYQSTIIDMNFHMQT----QDFISVEYVSQEWFII-----VLSY---R*LDQTTHLQI-- 221
+ Q ++D N MQT +D + SQE + VL Y + D+ +HL++
Sbjct: 854 MQQKQVLDKNGMMQTDAIWEDLRTTLIASQESAAVHILLEVLDYIASKATDRVSHLELRE 913
Query: 222 --------LNQTYATSTS*QAMTILNFFPRQIFPFLLASLQGQHLCIFCYHFF 356
++Q + + S + +P+ + P ++AS+ H+CI H F
Sbjct: 914 IQGIIGTYVHQAFISEPSLAKLVHFQTYPKSVIPMMVASVPSMHICIDFVHEF 966
>dbj|BAB17349.1| P0698G03.33 [Oryza sativa (japonica cultivar-group)]
gi|14090210|dbj|BAB55471.1| P0494A10.11 [Oryza sativa
(japonica cultivar-group)]
Length = 923
Score = 32.7 bits (73), Expect = 2.2
Identities = 18/44 (40%), Positives = 24/44 (53%), Gaps = 4/44 (9%)
Frame = +3
Query: 366 MFFNKSMRNFIDLGLVSSHQKRKSQCVE----DPPCLLQPKNFL 485
+FF KS IDLGL QK K+ ++ DPP +PK F+
Sbjct: 141 VFFTKSFAKQIDLGLNKGRQKIKATSIDNTSADPPENCKPKEFI 184
>ref|NP_196896.1| putative protein; protein id: At5g13920.1 [Arabidopsis thaliana]
gi|10177658|dbj|BAB11120.1|
emb|CAB86673.1~gene_id:MAC12.12~similar to unknown
protein [Arabidopsis thaliana]
Length = 415
Score = 32.0 bits (71), Expect = 3.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 490 PGRKFLGCRRHGGSSTHCDFLFWCDDTSPRSMKFR 386
PGRKF C ++ +C F WCD + +KFR
Sbjct: 57 PGRKFYKCP----TAQNCCFFKWCDKVTDEDIKFR 87
>gb|AAK82634.1| cytochrome c oxidase subunit II [Aphodius quadrimaculatus]
Length = 194
Score = 32.0 bits (71), Expect = 3.8
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 257 SYDYS*LLPKTNISILTCFPPRSTLVHFLLPLLHLFYVLQ*INAKL 394
+Y+Y LL I I+ P TL+ LP LHL Y+L +N L
Sbjct: 49 TYNYRFLLEGQLIEIMWTILPAITLIFIALPSLHLLYLLDEMNNPL 94
>gb|AAK82636.1| cytochrome c oxidase subunit II [Aphodius constans]
Length = 194
Score = 31.6 bits (70), Expect = 5.0
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 257 SYDYS*LLPKTNISILTCFPPRSTLVHFLLPLLHLFYVLQ*INAKL 394
+Y+Y LL I I+ P TL+ LP LHL Y+L +N L
Sbjct: 49 TYNYRYLLEGQLIEIVWTILPAITLIFIALPSLHLLYLLDEMNNPL 94
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 418,890,127
Number of Sequences: 1393205
Number of extensions: 8531752
Number of successful extensions: 23063
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 22601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23047
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
