Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008620A_C01 KMC008620A_c01
(407 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL18930.1|AF429389_1 hydroxymethylglutaryl coenzyme A syntha... 115 2e-25
gb|AAK73854.1| hydroxymethylglutaryl coenzyme A synthase [Hevea ... 112 1e-24
gb|AAF69804.1|AF148847_1 HMG-CoA synthase [Brassica juncea] 102 9e-22
gb|AAM98150.1| hydroxymethylglutaryl-CoA synthase [Arabidopsis t... 101 3e-21
ref|NP_192919.1| hydroxymethylglutaryl-CoA synthase; protein id:... 101 3e-21
>gb|AAL18930.1|AF429389_1 hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis]
Length = 464
Score = 115 bits (287), Expect = 2e-25
Identities = 55/81 (67%), Positives = 67/81 (81%)
Frame = -3
Query: 405 DVAGKLKSRHEFPPEKFVEILKLMEHRYGAQEFVTSKDISLLSPGTFYLTEVDSMYRRFY 226
+VAGKLK+RHE PPEKFV+I+KLMEHRYGA++FVTSKD SLL+ GT+YLTEVDS+YRRFY
Sbjct: 387 NVAGKLKARHELPPEKFVDIMKLMEHRYGAKDFVTSKDCSLLASGTYYLTEVDSLYRRFY 446
Query: 225 EEKTKESRLTPAVNGLTVNGH 163
+K + + NGL NGH
Sbjct: 447 AQKAVGNTVE---NGLLANGH 464
>gb|AAK73854.1| hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis]
Length = 464
Score = 112 bits (279), Expect = 1e-24
Identities = 54/81 (66%), Positives = 65/81 (79%)
Frame = -3
Query: 405 DVAGKLKSRHEFPPEKFVEILKLMEHRYGAQEFVTSKDISLLSPGTFYLTEVDSMYRRFY 226
+VAGKLK+RHE PPEKFV I+KLMEHRYGA++FV SKD SLL+ GT+YLTEVDS+YRRFY
Sbjct: 387 NVAGKLKARHELPPEKFVNIMKLMEHRYGAKDFVRSKDCSLLASGTYYLTEVDSLYRRFY 446
Query: 225 EEKTKESRLTPAVNGLTVNGH 163
+K + + NGL NGH
Sbjct: 447 AQKAVGNTVE---NGLLANGH 464
>gb|AAF69804.1|AF148847_1 HMG-CoA synthase [Brassica juncea]
Length = 461
Score = 102 bits (255), Expect = 9e-22
Identities = 51/83 (61%), Positives = 63/83 (75%), Gaps = 2/83 (2%)
Frame = -3
Query: 405 DVAGKLKSRHEFPPEKFVEILKLMEHRYGAQEFVTSKD--ISLLSPGTFYLTEVDSMYRR 232
DV GKLK+RHE+ PEKFVE +KLMEHRYGA+EFVTSK+ + LL+PGT+YL EVDS+YRR
Sbjct: 387 DVGGKLKARHEYAPEKFVETMKLMEHRYGAKEFVTSKEGILDLLAPGTYYLKEVDSLYRR 446
Query: 231 FYEEKTKESRLTPAVNGLTVNGH 163
FY +K + +T NGH
Sbjct: 447 FYGKKGDDGSIT--------NGH 461
>gb|AAM98150.1| hydroxymethylglutaryl-CoA synthase [Arabidopsis thaliana]
Length = 406
Score = 101 bits (251), Expect = 3e-21
Identities = 50/83 (60%), Positives = 63/83 (75%), Gaps = 2/83 (2%)
Frame = -3
Query: 405 DVAGKLKSRHEFPPEKFVEILKLMEHRYGAQEFVTSKD--ISLLSPGTFYLTEVDSMYRR 232
DV GKLK+RHE+ PEKFVE +KLMEHRYGA++FVT+K+ I LL+PGT+YL EVDS+YRR
Sbjct: 332 DVGGKLKARHEYAPEKFVETMKLMEHRYGAKDFVTTKEGIIDLLAPGTYYLKEVDSLYRR 391
Query: 231 FYEEKTKESRLTPAVNGLTVNGH 163
FY +K ++ G NGH
Sbjct: 392 FYGKKGED--------GSVANGH 406
>ref|NP_192919.1| hydroxymethylglutaryl-CoA synthase; protein id: At4g11820.1,
supported by cDNA: 22413., supported by cDNA: gi_4098520
[Arabidopsis thaliana] gi|21431772|sp|P54873|HMCS_ARATH
Hydroxymethylglutaryl-CoA synthase (HMG-CoA synthase)
(3-hydroxy-3-methylglutaryl coenzyme A synthase)
gi|7436679|pir||T09341 hydroxymethylglutaryl-CoA
synthase (EC 4.1.3.5) - Arabidopsis thaliana
gi|4098521|gb|AAD00297.1| HMG-CoA synthase [Arabidopsis
thaliana] gi|4098523|gb|AAD00298.1| HMG-CoA synthase
[Arabidopsis thaliana] gi|5002517|emb|CAB44320.1|
hydroxymethylglutaryl-CoA synthase [Arabidopsis
thaliana] gi|7267882|emb|CAB78225.1|
hydroxymethylglutaryl-CoA synthase [Arabidopsis
thaliana]
Length = 461
Score = 101 bits (251), Expect = 3e-21
Identities = 50/83 (60%), Positives = 63/83 (75%), Gaps = 2/83 (2%)
Frame = -3
Query: 405 DVAGKLKSRHEFPPEKFVEILKLMEHRYGAQEFVTSKD--ISLLSPGTFYLTEVDSMYRR 232
DV GKLK+RHE+ PEKFVE +KLMEHRYGA++FVT+K+ I LL+PGT+YL EVDS+YRR
Sbjct: 387 DVGGKLKARHEYAPEKFVETMKLMEHRYGAKDFVTTKEGIIDLLAPGTYYLKEVDSLYRR 446
Query: 231 FYEEKTKESRLTPAVNGLTVNGH 163
FY +K ++ G NGH
Sbjct: 447 FYGKKGED--------GSVANGH 461
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 333,314,916
Number of Sequences: 1393205
Number of extensions: 6567215
Number of successful extensions: 12898
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 12539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12887
length of database: 448,689,247
effective HSP length: 111
effective length of database: 294,043,492
effective search space used: 7057043808
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
