Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008611A_C01 KMC008611A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195409.1| putative protein; protein id: At4g36910.1 [Arab... 52 3e-06
ref|NP_567952.1| putative protein; protein id: At4g34120.1, supp... 44 9e-04
pir||S25462 Ig kappa chain V region - mouse gi|938263|emb|CAA478... 35 0.54
ref|ZP_00072250.1| hypothetical protein [Trichodesmium erythraeu... 34 0.91
gb|AAB48727.1| anti-DNA immunoglobulin light chain IgG [Mus musc... 34 0.91
>ref|NP_195409.1| putative protein; protein id: At4g36910.1 [Arabidopsis thaliana]
gi|25407775|pir||H85435 hypothetical protein AT4g36910
[imported] - Arabidopsis thaliana
gi|4006881|emb|CAB16799.1| putative protein [Arabidopsis
thaliana] gi|7270640|emb|CAB80357.1| putative protein
[Arabidopsis thaliana] gi|21537376|gb|AAM61717.1|
unknown [Arabidopsis thaliana]
gi|28392900|gb|AAO41886.1| unknown protein [Arabidopsis
thaliana] gi|28827758|gb|AAO50723.1| unknown protein
[Arabidopsis thaliana]
Length = 236
Score = 52.4 bits (124), Expect = 3e-06
Identities = 24/31 (77%), Positives = 28/31 (89%)
Frame = -3
Query: 522 PVVDRDGKLVGLITRGNIVKAALLSKRAGDR 430
PVVD DGKLVG+ITRGN+V+AAL KR+GDR
Sbjct: 204 PVVDSDGKLVGIITRGNVVRAALQIKRSGDR 234
>ref|NP_567952.1| putative protein; protein id: At4g34120.1, supported by cDNA:
gi_13430837, supported by cDNA: gi_15810600 [Arabidopsis
thaliana] gi|13430838|gb|AAK26041.1|AF360331_1 unknown
protein [Arabidopsis thaliana]
gi|15810601|gb|AAL07188.1| unknown protein [Arabidopsis
thaliana]
Length = 238
Score = 44.3 bits (103), Expect = 9e-04
Identities = 19/27 (70%), Positives = 24/27 (88%)
Frame = -3
Query: 522 PVVDRDGKLVGLITRGNIVKAALLSKR 442
PVVD DGKL+G++TRGN+V+AAL KR
Sbjct: 206 PVVDADGKLIGILTRGNVVRAALQIKR 232
>pir||S25462 Ig kappa chain V region - mouse gi|938263|emb|CAA47881.1| IgG light
chain V region [Mus musculus]
Length = 91
Score = 35.0 bits (79), Expect = 0.54
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 395 KLFLFHLSNYESLSPARFDSNAALTIFPLVISPTSFPSLST 517
KL ++H SN ES PARF + + T F L I P +T
Sbjct: 49 KLLIYHASNLESGVPARFSGSGSRTDFTLTIDPVEADDAAT 89
>ref|ZP_00072250.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 153
Score = 34.3 bits (77), Expect = 0.91
Identities = 12/21 (57%), Positives = 20/21 (95%)
Frame = -3
Query: 522 PVVDRDGKLVGLITRGNIVKA 460
PVVD +GK++G++TRG+I++A
Sbjct: 129 PVVDENGKVIGILTRGDIIRA 149
>gb|AAB48727.1| anti-DNA immunoglobulin light chain IgG [Mus musculus]
Length = 102
Score = 34.3 bits (77), Expect = 0.91
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 395 KLFLFHLSNYESLSPARFDSNAALTIFPLVISPTSFPSLST 517
KL ++ SN ES PARF + + T F L I+P ++T
Sbjct: 46 KLLIYRASNLESXIPARFSGSGSRTDFTLTINPVEADDVAT 86
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,760,140
Number of Sequences: 1393205
Number of extensions: 7986985
Number of successful extensions: 16800
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 16245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16789
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
