Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008601A_C01 KMC008601A_c01
(386 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568074.1| ubiquitin-specific protease 3 (UBP3); protein i... 35 0.23
ref|NP_565532.1| ubiquitin-specific protease 4 (UBP4); protein i... 33 0.87
gb|AAM65268.1| ubiquitin-specific protease 4 (UBP4) [Arabidopsis... 33 0.87
emb|CAD40853.1| OSJNBa0086B14.25 [Oryza sativa (japonica cultiva... 32 1.9
ref|NP_473327.1| hypothetical protein [Plasmodium falciparum 3D7... 30 9.6
>ref|NP_568074.1| ubiquitin-specific protease 3 (UBP3); protein id: At4g39910.1,
supported by cDNA: gi_16604538, supported by cDNA:
gi_18958041, supported by cDNA: gi_2347097 [Arabidopsis
thaliana] gi|7488412|pir||T06097 ubiquitin-specific
proteinase (EC 3.4.-.-) UBP3 - Arabidopsis thaliana
gi|2347098|gb|AAB67966.1| ubiquitin-specific protease
[Arabidopsis thaliana] gi|4490742|emb|CAB38904.1|
ubiquitin-specific protease (AtUBP3) [Arabidopsis
thaliana] gi|7271046|emb|CAB80654.1| ubiquitin-specific
protease (AtUBP3) [Arabidopsis thaliana]
gi|16604539|gb|AAL24275.1| AT4g39910/T5J17_80
[Arabidopsis thaliana] gi|18958042|gb|AAL79594.1|
AT4g39910/T5J17_80 [Arabidopsis thaliana]
Length = 371
Score = 35.0 bits (79), Expect = 0.23
Identities = 14/15 (93%), Positives = 15/15 (99%)
Frame = -2
Query: 385 SNTDHGYILFYESVG 341
SNTDHGYILFYES+G
Sbjct: 354 SNTDHGYILFYESLG 368
>ref|NP_565532.1| ubiquitin-specific protease 4 (UBP4); protein id: At2g22310.1,
supported by cDNA: 38055., supported by cDNA:
gi_15081736, supported by cDNA: gi_18252270, supported
by cDNA: gi_2347099 [Arabidopsis thaliana]
gi|25412098|pir||B84611 probable ubiquitin carboxyl
terminal hydrolase [imported] - Arabidopsis thaliana
gi|2347100|gb|AAB67967.1| ubiquitin-specific protease
[Arabidopsis thaliana] gi|4567196|gb|AAD23612.1|
ubiquitin-specific protease 4 (UBP4) [Arabidopsis
thaliana] gi|15081737|gb|AAK82523.1| At2g22310/T26C19.3
[Arabidopsis thaliana] gi|18252271|gb|AAL62016.1|
At2g22310/T26C19.3 [Arabidopsis thaliana]
Length = 365
Score = 33.1 bits (74), Expect = 0.87
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -2
Query: 385 SNTDHGYILFYESVGS 338
SNTDHGYIL YES+G+
Sbjct: 349 SNTDHGYILLYESLGT 364
>gb|AAM65268.1| ubiquitin-specific protease 4 (UBP4) [Arabidopsis thaliana]
Length = 365
Score = 33.1 bits (74), Expect = 0.87
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -2
Query: 385 SNTDHGYILFYESVGS 338
SNTDHGYIL YES+G+
Sbjct: 349 SNTDHGYILLYESLGT 364
>emb|CAD40853.1| OSJNBa0086B14.25 [Oryza sativa (japonica cultivar-group)]
Length = 365
Score = 32.0 bits (71), Expect = 1.9
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -2
Query: 382 NTDHGYILFYESVG 341
NTDHGYILFYE +G
Sbjct: 349 NTDHGYILFYEGLG 362
>ref|NP_473327.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|4493979|emb|CAB39038.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2706
Score = 29.6 bits (65), Expect = 9.6
Identities = 17/63 (26%), Positives = 23/63 (35%)
Frame = +2
Query: 14 NKCRRNYPLSYEEELSLICASN*LNI*HHEYIVGE*KSHHTIYTALYLLLFVKRGQCFHY 193
N C NY +Y C +N N H+ Y ++H Y Y R C +Y
Sbjct: 579 NNCHNNYDNNYHNNYHNNCHNNYHNNCHNNYHNNCHNNYHNYYHNRYHYSCGGRNSCLYY 638
Query: 194 PLY 202
Y
Sbjct: 639 KTY 641
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 318,327,643
Number of Sequences: 1393205
Number of extensions: 6135253
Number of successful extensions: 9700
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9700
length of database: 448,689,247
effective HSP length: 104
effective length of database: 303,795,927
effective search space used: 7291102248
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
