Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008597A_C01 KMC008597A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T00641 hypothetical protein F3I6.4 - Arabidopsis thaliana g... 40 0.026
ref|NP_173822.2| DNAJ-like heatshock protein; protein id: At1g24... 40 0.026
ref|NP_176206.1| hypothetical protein; protein id: At1g59980.1 [... 33 3.1
dbj|BAC43485.1| unknown protein [Arabidopsis thaliana] gi|289731... 33 3.1
gb|AAO51849.1| similar to C33G8.2.p [Caenorhabditis elegans] [Di... 33 3.1
>pir||T00641 hypothetical protein F3I6.4 - Arabidopsis thaliana
gi|2829865|gb|AAC00573.1| N-terminal region similar to
DNA-J proteins [Arabidopsis thaliana]
Length = 388
Score = 39.7 bits (91), Expect = 0.026
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = -1
Query: 556 KRSSKEANEDGQAREKRSSRDRS----KKKKWYNLHLRVDKRKAC 434
+ +E Q +K S+ D+S KK KW+NLHL++DK+K C
Sbjct: 344 EEEEEEEESSRQKNKKPSTCDKSETLKKKSKWFNLHLKLDKKKPC 388
>ref|NP_173822.2| DNAJ-like heatshock protein; protein id: At1g24120.1, supported by
cDNA: gi_18377834 [Arabidopsis thaliana]
gi|18377835|gb|AAL67104.1| At1g24120/F3I6_4 [Arabidopsis
thaliana]
Length = 436
Score = 39.7 bits (91), Expect = 0.026
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = -1
Query: 556 KRSSKEANEDGQAREKRSSRDRS----KKKKWYNLHLRVDKRKAC 434
+ +E Q +K S+ D+S KK KW+NLHL++DK+K C
Sbjct: 392 EEEEEEEESSRQKNKKPSTCDKSETLKKKSKWFNLHLKLDKKKPC 436
>ref|NP_176206.1| hypothetical protein; protein id: At1g59980.1 [Arabidopsis
thaliana] gi|25296041|pir||A96624 hypothetical protein
T2K10.3 [imported] - Arabidopsis thaliana
gi|4249377|gb|AAD14474.1|AAD14474 Similar to gi|2829865
F3I6.4 from Arabidopsis thaliana BAC gb|AC002396
Length = 384
Score = 32.7 bits (73), Expect = 3.1
Identities = 18/41 (43%), Positives = 24/41 (57%), Gaps = 2/41 (4%)
Frame = -1
Query: 556 KRSS--KEANEDGQAREKRSSRDRSKKKKWYNLHLRVDKRK 440
K+SS E E+G+ + KKKKWYN+ LR DK+K
Sbjct: 345 KKSSLLMEPREEGEVAVREEGG--VKKKKWYNIQLRQDKKK 383
>dbj|BAC43485.1| unknown protein [Arabidopsis thaliana] gi|28973195|gb|AAO63922.1|
unknown protein [Arabidopsis thaliana]
Length = 414
Score = 32.7 bits (73), Expect = 3.1
Identities = 18/41 (43%), Positives = 24/41 (57%), Gaps = 2/41 (4%)
Frame = -1
Query: 556 KRSS--KEANEDGQAREKRSSRDRSKKKKWYNLHLRVDKRK 440
K+SS E E+G+ + KKKKWYN+ LR DK+K
Sbjct: 375 KKSSLLMEPREEGEVAVREEGG--VKKKKWYNIQLRQDKKK 413
>gb|AAO51849.1| similar to C33G8.2.p [Caenorhabditis elegans] [Dictyostelium
discoideum]
Length = 261
Score = 32.7 bits (73), Expect = 3.1
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 556 KRSSKEANEDGQAREKRSSRDRSKKKKWYNLHLRVD 449
++S +++ D Q +EK +D+ KKKK +H+R D
Sbjct: 175 EKSEWDSDNDEQQQEKEKEKDKKKKKKNLKIHMRSD 210
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,695,367
Number of Sequences: 1393205
Number of extensions: 9544210
Number of successful extensions: 23260
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 21950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23063
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
