Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008575A_C01 KMC008575A_c01
(463 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42236.1| unknown protein [Arabidopsis thaliana] 41 0.005
ref|NP_173844.1| polyketide hydroxylase-related; protein id: At1... 41 0.005
dbj|BAB89962.1| P0035F12.19 [Oryza sativa (japonica cultivar-gro... 40 0.009
dbj|BAA25606.1| hydroxylase [Rhodococcus erythropolis] 32 4.2
gb|ZP_00077160.1| hypothetical protein [Methanosarcina barkeri] 32 4.2
>dbj|BAC42236.1| unknown protein [Arabidopsis thaliana]
Length = 709
Score = 41.2 bits (95), Expect = 0.005
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = -3
Query: 461 CNMTNRGAILVRPDEHIAWHTISGL 387
C M+ RG+ILVRPD+HIAW SG+
Sbjct: 666 CKMSERGSILVRPDQHIAWRAKSGI 690
>ref|NP_173844.1| polyketide hydroxylase-related; protein id: At1g24340.1
[Arabidopsis thaliana] gi|7486374|pir||T00665
hypothetical protein F3I6.28 - Arabidopsis thaliana
gi|2829888|gb|AAC00596.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 707
Score = 41.2 bits (95), Expect = 0.005
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = -3
Query: 461 CNMTNRGAILVRPDEHIAWHTISGL 387
C M+ RG+ILVRPD+HIAW SG+
Sbjct: 664 CKMSERGSILVRPDQHIAWRAKSGI 688
>dbj|BAB89962.1| P0035F12.19 [Oryza sativa (japonica cultivar-group)]
gi|20161609|dbj|BAB90529.1| B1065G12.11 [Oryza sativa
(japonica cultivar-group)]
Length = 543
Score = 40.4 bits (93), Expect = 0.009
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = -3
Query: 461 CNMTNRGAILVRPDEHIAWHTISGLDTGS*SGNARRFFASV 339
C +T++ ILVRPDEHIAW T S T + RR F+ V
Sbjct: 496 CQITSKSVILVRPDEHIAWRTESDRVTDA-DSEVRRVFSEV 535
>dbj|BAA25606.1| hydroxylase [Rhodococcus erythropolis]
Length = 587
Score = 31.6 bits (70), Expect = 4.2
Identities = 12/17 (70%), Positives = 14/17 (81%)
Frame = -3
Query: 443 GAILVRPDEHIAWHTIS 393
GAILVRPD H+AW + S
Sbjct: 552 GAILVRPDNHVAWRSAS 568
>gb|ZP_00077160.1| hypothetical protein [Methanosarcina barkeri]
Length = 245
Score = 31.6 bits (70), Expect = 4.2
Identities = 20/52 (38%), Positives = 25/52 (47%), Gaps = 4/52 (7%)
Frame = -3
Query: 446 RGAILVRPDEHIAWHTISGLDT----GS*SGNARRFFASVYWEYTSNKQPGQ 303
R AILVRPD + + GL G G AR F + W + +NK P Q
Sbjct: 26 RAAILVRPDMKVEFRAPQGLSADTIRGMVEGKARWIFKKLEW-FEANKLPDQ 76
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 377,172,085
Number of Sequences: 1393205
Number of extensions: 7369929
Number of successful extensions: 15425
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15423
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
