Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008566A_C01 KMC008566A_c01
(533 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO50887.1| hypothetical protein [Dictyostelium discoideum] 33 2.8
gb|ZP_00012085.1| hypothetical protein [Rhodopseudomonas palustris] 32 4.8
>gb|AAO50887.1| hypothetical protein [Dictyostelium discoideum]
Length = 1325
Score = 32.7 bits (73), Expect = 2.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 329 INIVISIPSVCDFNTLQPMPPTLGTTRTTKTVV 427
I++ S S+ D +QP PPT TT TT T++
Sbjct: 404 ISLATSQDSITDSTIIQPPPPTTTTTTTTNTII 436
>gb|ZP_00012085.1| hypothetical protein [Rhodopseudomonas palustris]
Length = 268
Score = 32.0 bits (71), Expect = 4.8
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Frame = -3
Query: 477 AEHSLSFSMRRLWAGKRTTVFVVLVV-----PSVGGMG*RVLKSQT--LGMLMTMLILRP 319
A S+ +R L G+R VFVV + ++GG+G R++ S T L M+ ++L+L P
Sbjct: 161 AAASIGQGVRHLLLGRRFNVFVVAAIVGCISAALGGLGARLIGSSTTELAMMASILLLVP 220
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 436,155,499
Number of Sequences: 1393205
Number of extensions: 8844203
Number of successful extensions: 21514
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21509
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
