Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008563A_C01 KMC008563A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC24588.1| late embryogenesis-like protein [Prunus armeniaca] 85 4e-16
ref|NP_181934.1| similar to late embryogenesis abundant proteins... 70 1e-11
gb|AAM64433.1| similar to late embryogenesis abundant proteins [... 69 4e-11
ref|NP_457740.1| putative membrane protein [Salmonella enterica ... 33 1.9
gb|AAO50987.1| hypothetical protein [Dictyostelium discoideum] 32 3.2
>gb|AAC24588.1| late embryogenesis-like protein [Prunus armeniaca]
Length = 262
Score = 85.1 bits (209), Expect = 4e-16
Identities = 37/46 (80%), Positives = 44/46 (95%)
Frame = -1
Query: 507 TGYSMKGHIDVDTPFGAMKLPITKEGGTTRLKKKKEDGGDDDDEED 370
TGY++KG+I+VDTPFGAMKLPI KEGGTTRL+K KEDGGDDDDE++
Sbjct: 216 TGYTIKGNINVDTPFGAMKLPIVKEGGTTRLRKNKEDGGDDDDEDE 261
>ref|NP_181934.1| similar to late embryogenesis abundant proteins; protein id:
At2g44060.1, supported by cDNA: 2450. [Arabidopsis
thaliana] gi|7486479|pir||T00686 similar to late
embryogenesis abundant proteins [imported] - Arabidopsis
thaliana gi|3212877|gb|AAC23428.1| similar to late
embryogenesis abundant proteins [Arabidopsis thaliana]
Length = 325
Score = 70.5 bits (171), Expect = 1e-11
Identities = 34/45 (75%), Positives = 39/45 (86%)
Frame = -1
Query: 507 TGYSMKGHIDVDTPFGAMKLPITKEGGTTRLKKKKEDGGDDDDEE 373
TGY++KG+IDVDTPFGAMKLPI KEGG TRLKK+ + DDDDEE
Sbjct: 284 TGYTIKGNIDVDTPFGAMKLPIIKEGGETRLKKEDD---DDDDEE 325
>gb|AAM64433.1| similar to late embryogenesis abundant proteins [Arabidopsis
thaliana]
Length = 324
Score = 68.6 bits (166), Expect = 4e-11
Identities = 33/44 (75%), Positives = 38/44 (86%)
Frame = -1
Query: 507 TGYSMKGHIDVDTPFGAMKLPITKEGGTTRLKKKKEDGGDDDDE 376
TGY++KG+IDVDTPFGAMKLPI KEGG TRLKK+ + DDDDE
Sbjct: 284 TGYTIKGNIDVDTPFGAMKLPIIKEGGETRLKKEDD---DDDDE 324
>ref|NP_457740.1| putative membrane protein [Salmonella enterica subsp. enterica
serovar Typhi] gi|29143612|ref|NP_806954.1| putative
membrane protein [Salmonella enterica subsp. enterica
serovar Typhi Ty2] gi|25371995|pir||AI0910 probable
membrane protein STY3545 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16504426|emb|CAD07879.1| putative membrane protein
[Salmonella enterica subsp. enterica serovar Typhi]
gi|29139247|gb|AAO70814.1| putative membrane protein
[Salmonella enterica subsp. enterica serovar Typhi Ty2]
Length = 655
Score = 33.1 bits (74), Expect = 1.9
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = -1
Query: 279 LKGFHYLVVLIAIYAC*EIKLTFQMEGCSEFIVNISCSLAFAFAFQAMFLFHVRSYSKRT 100
L G+ L+++I I + F +E CSE ++ I C A A LF RS +
Sbjct: 123 LSGYTALIIVITIQTEPLLTPQFALERCSEIVIGIGC------AILADLLFSPRSIKQEV 176
Query: 99 LLCLVWS*CLLVKKYS----CILNSDS 31
L CLLV +Y CI + DS
Sbjct: 177 DRELD---CLLVAQYQLMQLCIKHGDS 200
>gb|AAO50987.1| hypothetical protein [Dictyostelium discoideum]
Length = 1126
Score = 32.3 bits (72), Expect = 3.2
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3
Query: 369 NPPHHHHLHHLPS 407
N PHHHH HHLPS
Sbjct: 775 NQPHHHHHHHLPS 787
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,297,728
Number of Sequences: 1393205
Number of extensions: 8730206
Number of successful extensions: 36598
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 29653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35447
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
