Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008549A_C01 KMC008549A_c01
(459 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28144356 TPA: PDR10 ABC transporter [Arabidopsis thaliana] 37 0.13
dbj|BAB02609.1| ABC transporter-like protein [Arabidopsis thaliana] 37 0.13
ref|NP_683617.1| putative ABC transporter; protein id: At3g30842... 37 0.13
dbj|BAB92011.1| pleiotropic drug resistance like protein [Nicoti... 36 0.22
emb|CAD59568.1| PDR-like ABC transporter [Oryza sativa (japonica... 35 0.48
>gi|28144356 TPA: PDR10 ABC transporter [Arabidopsis thaliana]
Length = 1418
Score = 36.6 bits (83), Expect = 0.13
Identities = 22/45 (48%), Positives = 25/45 (54%), Gaps = 6/45 (13%)
Frame = -3
Query: 451 GGQHIYDGPIADHDSHLIQYSE----V*DIREG--KELWRTEVTT 335
GG+ IY GPI H S LI+Y E V I+EG W EVTT
Sbjct: 1049 GGEEIYVGPIGHHSSQLIEYFEGIRGVGKIKEGYNPATWALEVTT 1093
>dbj|BAB02609.1| ABC transporter-like protein [Arabidopsis thaliana]
Length = 1405
Score = 36.6 bits (83), Expect = 0.13
Identities = 22/45 (48%), Positives = 25/45 (54%), Gaps = 6/45 (13%)
Frame = -3
Query: 451 GGQHIYDGPIADHDSHLIQYSE----V*DIREG--KELWRTEVTT 335
GG+ IY GPI H S LI+Y E V I+EG W EVTT
Sbjct: 1056 GGEEIYVGPIGHHSSQLIEYFEGIRGVGKIKEGYNPATWALEVTT 1100
>ref|NP_683617.1| putative ABC transporter; protein id: At3g30842.1 [Arabidopsis
thaliana]
Length = 1406
Score = 36.6 bits (83), Expect = 0.13
Identities = 22/45 (48%), Positives = 25/45 (54%), Gaps = 6/45 (13%)
Frame = -3
Query: 451 GGQHIYDGPIADHDSHLIQYSE----V*DIREG--KELWRTEVTT 335
GG+ IY GPI H S LI+Y E V I+EG W EVTT
Sbjct: 1037 GGEEIYVGPIGHHSSQLIEYFEGIRGVGKIKEGYNPATWALEVTT 1081
>dbj|BAB92011.1| pleiotropic drug resistance like protein [Nicotiana tabacum]
Length = 1434
Score = 35.8 bits (81), Expect = 0.22
Identities = 21/46 (45%), Positives = 25/46 (53%), Gaps = 6/46 (13%)
Frame = -3
Query: 451 GGQHIYDGPIADHDSHLIQYSE----V*DIREG--KELWRTEVTTT 332
GGQ IY GP+ H HLI+Y E V I+EG W EVT +
Sbjct: 1065 GGQEIYVGPLGRHSCHLIKYFESNPGVAKIKEGYNPATWMLEVTAS 1110
>emb|CAD59568.1| PDR-like ABC transporter [Oryza sativa (japonica cultivar-group)]
gi|28144343|tpg|DAA00886.1| TPA: PDR3 ABC transporter
[Oryza sativa (japonica cultivar-group)]
Length = 1457
Score = 34.7 bits (78), Expect = 0.48
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Frame = -3
Query: 451 GGQHIYDGPIADHDSHLIQYSE----V*DIREG--KELWRTEVTT 335
GG+ IY GP+ H S LI+Y E V I++G W EVTT
Sbjct: 1088 GGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTT 1132
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 391,347,698
Number of Sequences: 1393205
Number of extensions: 7886466
Number of successful extensions: 19524
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 19238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19523
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
