Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008522A_C01 KMC008522A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172666.1| unknown protein; protein id: At1g12020.1, suppo... 48 6e-05
pir||T01453 hypothetical protein F25O1.15 - Arabidopsis thaliana 41 0.007
gb|EAA11523.1| agCP6591 [Anopheles gambiae str. PEST] 41 0.007
gb|AAF70847.1|AC003113_14 F2401.15 [Arabidopsis thaliana] 41 0.007
ref|NP_176432.1| unknown protein; protein id: At1g62420.1 [Arabi... 41 0.007
>ref|NP_172666.1| unknown protein; protein id: At1g12020.1, supported by cDNA:
gi_18252908 [Arabidopsis thaliana]
gi|25372783|pir||C86255 protein F12F1.11 [imported] -
Arabidopsis thaliana gi|3157952|gb|AAC17635.1| F12F1.11
[Arabidopsis thaliana] gi|18252909|gb|AAL62381.1|
unknown protein [Arabidopsis thaliana]
Length = 226
Score = 48.1 bits (113), Expect = 6e-05
Identities = 27/62 (43%), Positives = 33/62 (52%), Gaps = 7/62 (11%)
Frame = -2
Query: 428 VTESCELKSVGE---SSGGASGSVAE----AGGGERVAADEEKGSVRRFVSFIGERIWGA 270
V SC S E GG SG + G +EEKG+VRRFVSFIGE+++G
Sbjct: 165 VVNSCPCTSSSELTQDGGGCSGGLEPMEFFCAGDACEKVEEEKGTVRRFVSFIGEKVFGV 224
Query: 269 WG 264
WG
Sbjct: 225 WG 226
>pir||T01453 hypothetical protein F25O1.15 - Arabidopsis thaliana
Length = 253
Score = 41.2 bits (95), Expect = 0.007
Identities = 22/47 (46%), Positives = 28/47 (58%)
Frame = -2
Query: 404 SVGESSGGASGSVAEAGGGERVAADEEKGSVRRFVSFIGERIWGAWG 264
S E +GG S GG E A++EKGSV + +SFIG+R G WG
Sbjct: 210 SSAEFAGGDSEKDGNCGGEE---AEKEKGSVGKVMSFIGQRFLGVWG 253
>gb|EAA11523.1| agCP6591 [Anopheles gambiae str. PEST]
Length = 307
Score = 41.2 bits (95), Expect = 0.007
Identities = 22/58 (37%), Positives = 25/58 (42%), Gaps = 9/58 (15%)
Frame = +2
Query: 326 PHQQQPSHHHQLQQHCH*HRHY---------SPPPISTHMTR*PQNSPTTRSVSTRPS 472
PHQQ P HHH H H H H+ SP H+T P SPT V+ S
Sbjct: 8 PHQQLPPHHHHPHHHPHHHHHHHHQPGTHPLSPHQQQQHLTVGPNGSPTGGHVTNNSS 65
>gb|AAF70847.1|AC003113_14 F2401.15 [Arabidopsis thaliana]
Length = 188
Score = 41.2 bits (95), Expect = 0.007
Identities = 22/47 (46%), Positives = 28/47 (58%)
Frame = -2
Query: 404 SVGESSGGASGSVAEAGGGERVAADEEKGSVRRFVSFIGERIWGAWG 264
S E +GG S GG E A++EKGSV + +SFIG+R G WG
Sbjct: 145 SSAEFAGGDSEKDGNCGGEE---AEKEKGSVGKVMSFIGQRFLGVWG 188
>ref|NP_176432.1| unknown protein; protein id: At1g62420.1 [Arabidopsis thaliana]
Length = 465
Score = 41.2 bits (95), Expect = 0.007
Identities = 22/47 (46%), Positives = 28/47 (58%)
Frame = -2
Query: 404 SVGESSGGASGSVAEAGGGERVAADEEKGSVRRFVSFIGERIWGAWG 264
S E +GG S GG E A++EKGSV + +SFIG+R G WG
Sbjct: 422 SSAEFAGGDSEKDGNCGGEE---AEKEKGSVGKVMSFIGQRFLGVWG 465
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,765,582
Number of Sequences: 1393205
Number of extensions: 9642676
Number of successful extensions: 51962
Number of sequences better than 10.0: 185
Number of HSP's better than 10.0 without gapping: 39945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49710
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
