Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008510A_C01 KMC008510A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK30204.1|AF349963_1 endoxyloglucan transferase [Daucus carota] 104 9e-22
dbj|BAA88668.1| ETAG-A3 [Lycopersicon esculentum] 100 2e-20
ref|NP_172925.1| xyloglucan endotransglycosylase (XTR2); protein... 91 1e-17
gb|AAD45125.1|AF163821_1 endoxyloglucan transferase [Arabidopsis... 89 5e-17
gb|AAM63050.1| putative xyloglucan-specific glucanase [Arabidops... 89 5e-17
>gb|AAK30204.1|AF349963_1 endoxyloglucan transferase [Daucus carota]
Length = 330
Score = 104 bits (259), Expect = 9e-22
Identities = 48/84 (57%), Positives = 57/84 (67%)
Frame = -3
Query: 560 TKCDIAQTSDAVPSGTITPSQRVKMEKFRLKHMTYSYCYDRIRYKASPPECVINPKQAER 381
T CD A S +VP+GT T R KM+ R K+M YSYCYD RY+ P ECVI+P ++ER
Sbjct: 239 TSCDTAPKSQSVPTGT-TKESRTKMQNLRKKYMQYSYCYDTTRYQVPPSECVIDPLESER 297
Query: 380 LRKFDPVTFGNGRNHHGKRHHHSR 309
LR FDPVTFG HGKRHH+ R
Sbjct: 298 LRGFDPVTFGTSHRGHGKRHHNRR 321
>dbj|BAA88668.1| ETAG-A3 [Lycopersicon esculentum]
Length = 314
Score = 100 bits (248), Expect = 2e-20
Identities = 46/88 (52%), Positives = 59/88 (66%)
Frame = -3
Query: 557 KCDIAQTSDAVPSGTITPSQRVKMEKFRLKHMTYSYCYDRIRYKASPPECVINPKQAERL 378
KCDI S ++P+ I+P QR KME+FR K++ YSYCYDR RY ECVI+PK+A RL
Sbjct: 224 KCDIVLDSASIPT-RISPDQRRKMERFRNKYLQYSYCYDRTRYNVPQSECVIDPKEANRL 282
Query: 377 RKFDPVTFGNGRNHHGKRHHHSRGNQAE 294
R FDP+TFG H KRHH + + +
Sbjct: 283 RGFDPMTFGGVPRHQNKRHHQRQSRRED 310
>ref|NP_172925.1| xyloglucan endotransglycosylase (XTR2); protein id: At1g14720.1,
supported by cDNA: 19079., supported by cDNA:
gi_1244755, supported by cDNA: gi_14326520, supported by
cDNA: gi_2154610 [Arabidopsis thaliana]
gi|2129770|pir||S71224 xyloglucan
endo-1,4-beta-D-glucanase (EC 3.2.1.-) XTR-2 -
Arabidopsis thaliana gi|1244756|gb|AAB18366.1|
xyloglucan endotransglycosylase-related protein
gi|2154611|dbj|BAA20290.1| endoxyloglucan transferase
related protein [Arabidopsis thaliana]
gi|5533311|gb|AAD45124.1|AF163820_1 endoxyloglucan
transferase [Arabidopsis thaliana]
gi|8778237|gb|AAF79246.1|AC006917_31 F10B6.12
[Arabidopsis thaliana]
gi|14326521|gb|AAK60305.1|AF385714_1 At1g14720/F10B6_29
[Arabidopsis thaliana] gi|21553987|gb|AAM63068.1|
xyloglucan endo-transglycosylase, putative [Arabidopsis
thaliana]
Length = 332
Score = 90.5 bits (223), Expect = 1e-17
Identities = 44/76 (57%), Positives = 51/76 (66%)
Frame = -3
Query: 512 ITPSQRVKMEKFRLKHMTYSYCYDRIRYKASPPECVINPKQAERLRKFDPVTFGNGRNHH 333
IT SQR KME FR KHMTYSYCYD +RYK ECV+NP +A+RLR +DPVTFG + H
Sbjct: 256 ITESQRNKMEIFRQKHMTYSYCYDHMRYKVVLSECVVNPAEAKRLRVYDPVTFGGIPHGH 315
Query: 332 GKRHHHSRGNQAEAVS 285
+ H SR A S
Sbjct: 316 RRGKHRSRSRLARTES 331
>gb|AAD45125.1|AF163821_1 endoxyloglucan transferase [Arabidopsis thaliana]
Length = 333
Score = 88.6 bits (218), Expect = 5e-17
Identities = 41/88 (46%), Positives = 54/88 (60%)
Frame = -3
Query: 557 KCDIAQTSDAVPSGTITPSQRVKMEKFRLKHMTYSYCYDRIRYKASPPECVINPKQAERL 378
+CD D + ITPSQR KM+ FR + MTYSYCYDR RY + ECV+NP +A+RL
Sbjct: 241 RCDEGAAEDMRAAQEITPSQRSKMDVFRRRLMTYSYCYDRARYNVALSECVVNPAEAQRL 300
Query: 377 RKFDPVTFGNGRNHHGKRHHHSRGNQAE 294
R +DPV FG H H S+ ++ +
Sbjct: 301 RVYDPVRFGGIPRRHRNGKHRSKRSRVD 328
>gb|AAM63050.1| putative xyloglucan-specific glucanase [Arabidopsis thaliana]
Length = 333
Score = 88.6 bits (218), Expect = 5e-17
Identities = 41/88 (46%), Positives = 54/88 (60%)
Frame = -3
Query: 557 KCDIAQTSDAVPSGTITPSQRVKMEKFRLKHMTYSYCYDRIRYKASPPECVINPKQAERL 378
+CD D + ITPSQR KM+ FR + MTYSYCYDR RY + ECV+NP +A+RL
Sbjct: 241 RCDEGAAEDIRAAQEITPSQRSKMDVFRRRLMTYSYCYDRARYNVALSECVVNPAEAQRL 300
Query: 377 RKFDPVTFGNGRNHHGKRHHHSRGNQAE 294
R +DPV FG H H S+ ++ +
Sbjct: 301 RVYDPVRFGGIPRRHRNGKHRSKRSRVD 328
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,192,092
Number of Sequences: 1393205
Number of extensions: 10134979
Number of successful extensions: 31871
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 30211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31717
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
