Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008509A_C01 KMC008509A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567842.1| putative protein; protein id: At4g30240.1, supp... 56 4e-07
pir||T14084 hypothetical protein F9N11.90 - Arabidopsis thaliana... 54 2e-06
ref|XP_287393.1| hypothetical protein XP_287393 [Mus musculus] 34 1.2
ref|NP_179476.1| unknown protein; protein id: At2g18860.1 [Arabi... 33 3.3
ref|NP_608934.1| CG7277-PA [Drosophila melanogaster] gi|10719971... 32 4.4
>ref|NP_567842.1| putative protein; protein id: At4g30240.1, supported by cDNA:
gi_16226656 [Arabidopsis thaliana]
gi|16226657|gb|AAL16225.1|AF428456_1 AT4g30240/F9N11_90
[Arabidopsis thaliana] gi|22137126|gb|AAM91408.1|
At4g30240/F9N11_90 [Arabidopsis thaliana]
Length = 300
Score = 55.8 bits (133), Expect = 4e-07
Identities = 30/82 (36%), Positives = 46/82 (55%)
Frame = -3
Query: 568 EDEQRNKPTRTVDATPKEKGFKPIFWKQKCEEYPQAMRAVQMLNQLFGRFGSRQRQVQNP 389
++E+R K ++ TPKEKG KP+FW Q+C +Y NQLF R QR+ + P
Sbjct: 227 KEEEREKFLSHIEDTPKEKGAKPMFWLQRCRDY----------NQLFDRVKVYQRRFRVP 276
Query: 388 LHLRNGCSIKVTLALMLTIFLI 323
L + +TL L+L +F++
Sbjct: 277 LSRPIKLILSLTLILILLLFIL 298
>pir||T14084 hypothetical protein F9N11.90 - Arabidopsis thaliana
gi|5730134|emb|CAB52468.1| putative protein [Arabidopsis
thaliana] gi|7269924|emb|CAB81017.1| putative protein
[Arabidopsis thaliana]
Length = 360
Score = 53.5 bits (127), Expect = 2e-06
Identities = 32/87 (36%), Positives = 45/87 (50%)
Frame = -3
Query: 568 EDEQRNKPTRTVDATPKEKGFKPIFWKQKCEEYPQAMRAVQMLNQLFGRFGSRQRQVQNP 389
++E+R K ++ TPKEKG KP+FW Q+C +Y NQLF R QR+ + P
Sbjct: 227 KEEEREKFLSHIEDTPKEKGAKPMFWLQRCRDY----------NQLFDRVKVYQRRFRVP 276
Query: 388 LHLRNGCSIKVTLALMLTIFLIVPFVL 308
L + +TL L+L F VL
Sbjct: 277 LSRPIKLILSLTLILILLCFFTDSCVL 303
>ref|XP_287393.1| hypothetical protein XP_287393 [Mus musculus]
Length = 191
Score = 34.3 bits (77), Expect = 1.2
Identities = 22/67 (32%), Positives = 35/67 (51%)
Frame = -3
Query: 379 RNGCSIKVTLALMLTIFLIVPFVLYST*AKRLIHSISSRGLCFSSLMMTRRSLAKGTVKG 200
R+ S+ V+L+L L++ L + L + L HS RGLC ++ R + +VKG
Sbjct: 62 RDSLSLSVSLSLCLSLSLSLSVSLSLCLSLSLSHSFFPRGLCLGLKVLARGT--PSSVKG 119
Query: 199 NQCHLPC 179
+ LPC
Sbjct: 120 SGRRLPC 126
>ref|NP_179476.1| unknown protein; protein id: At2g18860.1 [Arabidopsis thaliana]
gi|7485788|pir||T01614 hypothetical protein At2g18860
[imported] - Arabidopsis thaliana
gi|4185152|gb|AAD08955.1| unknown protein [Arabidopsis
thaliana] gi|20197038|gb|AAM14887.1| unknown protein
[Arabidopsis thaliana]
Length = 263
Score = 32.7 bits (73), Expect = 3.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 571 DEDEQRNKPTRTVDATPKEKGFKPIFWKQKCEEYPQ 464
D +E++ ++ATPK KG K + W Q+ ++ Q
Sbjct: 220 DNEEEKETLVAQIEATPKVKGTKSVLWMQRLPDHNQ 255
>ref|NP_608934.1| CG7277-PA [Drosophila melanogaster]
gi|10719971|sp|Q9VMQ5|COQ6_DROME Putative ubiquinone
biosynthesis monooxgenase COQ6 gi|7296986|gb|AAF52257.1|
CG7277-PA [Drosophila melanogaster]
gi|16183249|gb|AAL13672.1| GH22740p [Drosophila
melanogaster]
Length = 477
Score = 32.3 bits (72), Expect = 4.4
Identities = 19/34 (55%), Positives = 22/34 (63%), Gaps = 3/34 (8%)
Frame = -3
Query: 481 CEEYPQ---AMRAVQMLNQLFGRFGSRQRQVQNP 389
C +YP+ A +AVQ LN LFG GS Q QVQ P
Sbjct: 308 CRQYPRVELADKAVQALNSLFGHNGS-QHQVQYP 340
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,065,525
Number of Sequences: 1393205
Number of extensions: 9144138
Number of successful extensions: 17625
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17612
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
