Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008503A_C01 KMC008503A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA56266.1| MHC class I heavy chain [Equus caballus] 37 0.13
gb|AAA03457.1| MHC class I allele ShO 35 0.64
dbj|BAA24741.1| MHC class I heavy chain [Bos taurus] 35 0.64
dbj|BAA24740.1| MHC class I heavy chain [Bos taurus] 33 1.9
gb|AAC83850.1| MHC class I DLA-88 [Canis familiaris] gi|3983203|... 33 1.9
>emb|CAA56266.1| MHC class I heavy chain [Equus caballus]
Length = 340
Score = 37.0 bits (84), Expect = 0.13
Identities = 18/42 (42%), Positives = 24/42 (56%)
Frame = +3
Query: 240 PWSKSIQPNYHPPALTDSNTLKNDAENQRTGLNQLEGYYNVS 365
PW + P Y ++ T+K+ A+N R GLN L GYYN S
Sbjct: 50 PWMEQEGPEYWEE---NTQTIKSTAQNFRVGLNTLRGYYNQS 88
>gb|AAA03457.1| MHC class I allele ShO
Length = 349
Score = 34.7 bits (78), Expect = 0.64
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 240 PWSKSIQPNYHPPALTDSNTLKNDAENQRTGLNQLEGYYNVS 365
PW + + P Y ++ K +A+ R GLN L GYYN S
Sbjct: 59 PWMEQVGPEYWDQ---ETRNAKGNAQTFRVGLNTLRGYYNQS 97
>dbj|BAA24741.1| MHC class I heavy chain [Bos taurus]
Length = 167
Score = 34.7 bits (78), Expect = 0.64
Identities = 20/44 (45%), Positives = 23/44 (51%), Gaps = 2/44 (4%)
Frame = +3
Query: 240 PWSKSIQPNYHPPALTDSNT--LKNDAENQRTGLNQLEGYYNVS 365
PW + P Y D NT K+ A+N R GLN L GYYN S
Sbjct: 45 PWMEQEGPEYW-----DRNTRIYKDTAQNFRVGLNNLRGYYNQS 83
>dbj|BAA24740.1| MHC class I heavy chain [Bos taurus]
Length = 167
Score = 33.1 bits (74), Expect = 1.9
Identities = 20/47 (42%), Positives = 24/47 (50%), Gaps = 2/47 (4%)
Frame = +3
Query: 231 SWTPWSKSIQPNYHPPALTDSNT--LKNDAENQRTGLNQLEGYYNVS 365
S PW + P Y D NT K+ A+N R GLN L GYY+ S
Sbjct: 42 SRAPWMEQEGPEYW-----DRNTRIYKDTAQNFRVGLNNLRGYYDQS 83
>gb|AAC83850.1| MHC class I DLA-88 [Canis familiaris] gi|3983203|gb|AAC83851.1| MHC
class I DLA-88 [Canis familiaris]
gi|3983249|gb|AAC83874.1| MHC class I DLA-88 [Canis
familiaris]
Length = 89
Score = 33.1 bits (74), Expect = 1.9
Identities = 16/42 (38%), Positives = 21/42 (49%)
Frame = +3
Query: 240 PWSKSIQPNYHPPALTDSNTLKNDAENQRTGLNQLEGYYNVS 365
PW + P Y P + T+K A+ R L+ L GYYN S
Sbjct: 49 PWVEQEGPEYWDP---QTRTIKETAQRYRVSLDTLRGYYNQS 87
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,185,446
Number of Sequences: 1393205
Number of extensions: 8138195
Number of successful extensions: 17306
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 16915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17298
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
