Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008487A_C01 KMC008487A_c01
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC44257.1| FtsZ-like protein [Nicotiana tabacum] 130 9e-30
pir||T51087 chloroplast FtsZ-like protein [imported] - common to... 130 1e-29
ref|NP_190843.1| plastid division protein FtsZ-like; protein id:... 117 1e-25
gb|AAL07180.1| putative plastid division protein FtsZ [Arabidops... 117 1e-25
pir||T51088 plastid division protein ftsZ [imported] - Gentiana ... 115 3e-25
>emb|CAC44257.1| FtsZ-like protein [Nicotiana tabacum]
Length = 468
Score = 130 bits (328), Expect = 9e-30
Identities = 65/81 (80%), Positives = 74/81 (91%), Gaps = 1/81 (1%)
Frame = -3
Query: 562 TANLIFGAVIDPSLSGQVSITLIATGFKRQEESEGRPVQASQLTQGD-TIGINRRPSPFT 386
+ANLIFGAVIDPS+SGQVSITLIATGFKRQEES+GRP+Q +QLTQGD ++G NRRP+ F
Sbjct: 387 SANLIFGAVIDPSISGQVSITLIATGFKRQEESDGRPLQGNQLTQGDASLGSNRRPASFL 446
Query: 385 DGSLVEIPEFLRKKGRSRYPR 323
+G VEIPEFLRKKGRSRYPR
Sbjct: 447 EGGSVEIPEFLRKKGRSRYPR 467
>pir||T51087 chloroplast FtsZ-like protein [imported] - common tobacco
gi|7672163|emb|CAB89288.1| chloroplast FtsZ-like protein
[Nicotiana tabacum]
Length = 468
Score = 130 bits (327), Expect = 1e-29
Identities = 65/81 (80%), Positives = 74/81 (91%), Gaps = 1/81 (1%)
Frame = -3
Query: 562 TANLIFGAVIDPSLSGQVSITLIATGFKRQEESEGRPVQASQLTQGD-TIGINRRPSPFT 386
+ANLIFGAVIDPS+SGQVSITLIATGFKRQEES+GRP+Q +QLTQGD ++G NRRP+ F
Sbjct: 387 SANLIFGAVIDPSISGQVSITLIATGFKRQEESDGRPLQGNQLTQGDVSLGNNRRPASFL 446
Query: 385 DGSLVEIPEFLRKKGRSRYPR 323
+G VEIPEFLRKKGRSRYPR
Sbjct: 447 EGGSVEIPEFLRKKGRSRYPR 467
>ref|NP_190843.1| plastid division protein FtsZ-like; protein id: At3g52750.1,
supported by cDNA: gi_14488049, supported by cDNA:
gi_15810584 [Arabidopsis thaliana]
gi|11277911|pir||T49028 plastid division protein
FtsZ-like - Arabidopsis thaliana
gi|7669949|emb|CAB89236.1| plastid division protein
FtsZ-like [Arabidopsis thaliana]
gi|14488050|gb|AAK63846.1|AF384167_1 plastid division
protein FtsZ2-2 [Arabidopsis thaliana]
gi|23297760|gb|AAN13020.1| putative plastid division
protein FtsZ [Arabidopsis thaliana]
Length = 473
Score = 117 bits (292), Expect = 1e-25
Identities = 60/82 (73%), Positives = 70/82 (85%), Gaps = 1/82 (1%)
Frame = -3
Query: 562 TANLIFGAVIDPSLSGQVSITLIATGFKRQEESEGRPVQASQLTQGDTIGINRRP-SPFT 386
TANLIFGAV+DPS SGQ+SITLIATGFKRQEE EGRP+QA+Q ++G RRP S FT
Sbjct: 394 TANLIFGAVVDPSYSGQISITLIATGFKRQEEGEGRPLQATQADA--SMGATRRPSSSFT 451
Query: 385 DGSLVEIPEFLRKKGRSRYPRV 320
+GS +EIPEFL+KKGRSRYPR+
Sbjct: 452 EGSSIEIPEFLKKKGRSRYPRL 473
>gb|AAL07180.1| putative plastid division protein FtsZ [Arabidopsis thaliana]
Length = 473
Score = 117 bits (292), Expect = 1e-25
Identities = 60/82 (73%), Positives = 70/82 (85%), Gaps = 1/82 (1%)
Frame = -3
Query: 562 TANLIFGAVIDPSLSGQVSITLIATGFKRQEESEGRPVQASQLTQGDTIGINRRP-SPFT 386
TANLIFGAV+DPS SGQ+SITLIATGFKRQEE EGRP+QA+Q ++G RRP S FT
Sbjct: 394 TANLIFGAVVDPSYSGQISITLIATGFKRQEEGEGRPLQATQADA--SMGATRRPSSSFT 451
Query: 385 DGSLVEIPEFLRKKGRSRYPRV 320
+GS +EIPEFL+KKGRSRYPR+
Sbjct: 452 EGSSIEIPEFLKKKGRSRYPRL 473
>pir||T51088 plastid division protein ftsZ [imported] - Gentiana lutea
gi|6685070|gb|AAF23771.1|AF205859_1 FtsZ protein
[Gentiana lutea]
Length = 483
Score = 115 bits (289), Expect = 3e-25
Identities = 62/82 (75%), Positives = 68/82 (82%), Gaps = 2/82 (2%)
Frame = -3
Query: 562 TANLIFGAVIDPSLSGQVSITLIATGFKRQEESEGRPVQA-SQLTQGD-TIGINRRPSPF 389
+ANLIFGAV+DPSL GQVSITLIATGFKRQEES+ R +QA QL GD GINRRPS F
Sbjct: 401 SANLIFGAVVDPSLCGQVSITLIATGFKRQEESDKRSIQAGGQLAPGDANQGINRRPSSF 460
Query: 388 TDGSLVEIPEFLRKKGRSRYPR 323
++ VEIPEFLRKKGRSRYPR
Sbjct: 461 SESGSVEIPEFLRKKGRSRYPR 482
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,642,353
Number of Sequences: 1393205
Number of extensions: 9761013
Number of successful extensions: 19384
Number of sequences better than 10.0: 273
Number of HSP's better than 10.0 without gapping: 19045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19365
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
