Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008459A_C01 KMC008459A_c01
(446 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61516.1| unknown [Arabidopsis thaliana] 34 0.36
ref|NP_567661.1| putative protein; protein id: At4g22360.1, supp... 34 0.36
ref|NP_078225.1| unique hypothetical [Ureaplasma urealyticum] gi... 30 6.7
ref|NP_294270.1| hypothetical protein [Deinococcus radiodurans] ... 30 8.8
>gb|AAM61516.1| unknown [Arabidopsis thaliana]
Length = 385
Score = 34.3 bits (77), Expect = 0.36
Identities = 15/27 (55%), Positives = 23/27 (84%)
Frame = -2
Query: 445 QEIFGCESISALGIPELLGRHHIYRRS 365
+++ GCESISA+GI E+L R H+Y++S
Sbjct: 360 RDLLGCESISAVGINEML-RRHMYKQS 385
>ref|NP_567661.1| putative protein; protein id: At4g22360.1, supported by cDNA:
12272., supported by cDNA: gi_16604704, supported by
cDNA: gi_20258978 [Arabidopsis thaliana]
gi|16604705|gb|AAL24145.1| unknown protein [Arabidopsis
thaliana] gi|20258979|gb|AAM14205.1| unknown protein
[Arabidopsis thaliana]
Length = 385
Score = 34.3 bits (77), Expect = 0.36
Identities = 15/27 (55%), Positives = 23/27 (84%)
Frame = -2
Query: 445 QEIFGCESISALGIPELLGRHHIYRRS 365
+++ GCESISA+GI E+L R H+Y++S
Sbjct: 360 RDLLGCESISAVGINEML-RRHMYKQS 385
>ref|NP_078225.1| unique hypothetical [Ureaplasma urealyticum]
gi|11356934|pir||H82897 hypothetical protein UU390
[imported] - Ureaplasma urealyticum
gi|6899375|gb|AAF30800.1|AE002136_7 unique hypothetical
[Ureaplasma urealyticum]
Length = 271
Score = 30.0 bits (66), Expect = 6.7
Identities = 15/43 (34%), Positives = 22/43 (50%)
Frame = -2
Query: 331 GVNSSTVRADPDCMLIWFCNLTD*FVSLVYVYKLLAE*RCRDN 203
G N + AD +IW L+ F S +Y+ K++AE DN
Sbjct: 193 GFNKGVIIADIVLSIIWLLALSIGFASTIYIIKVMAEHHNLDN 235
>ref|NP_294270.1| hypothetical protein [Deinococcus radiodurans]
gi|7472611|pir||E75504 hypothetical protein -
Deinococcus radiodurans (strain R1)
gi|6458249|gb|AAF10135.1|AE001913_9 hypothetical protein
[Deinococcus radiodurans]
Length = 480
Score = 29.6 bits (65), Expect = 8.8
Identities = 30/113 (26%), Positives = 40/113 (34%), Gaps = 11/113 (9%)
Frame = +1
Query: 19 LSSCISLTTHKWQEPSGTDT--------SVSFLWSALYKCQNTHRSF*PTR*VRQQNTT* 174
L+ C+ L H W E S+SF A+ + SF P VR T
Sbjct: 70 LALCVLLPLHAWAEAPVVGNHWVLAALVSLSFCLDAVRRFLLPSSSFMPGELVRSARLT- 128
Query: 175 KHKCHAQNESCPCIFILLITYKHKLKTQINQSNYRTILTCS---QDQLVRYWN 324
LLI Y ++N ++C+ QDQLVR WN
Sbjct: 129 ----------------LLIAYAFAAFAKLNWDFLNPAVSCAVFYQDQLVRSWN 165
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 358,337,667
Number of Sequences: 1393205
Number of extensions: 6766748
Number of successful extensions: 16664
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16664
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 6622363848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
