Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008428A_C01 KMC008428A_c01
(526 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190035.1| putative protein; protein id: At3g44490.1 [Arab... 141 5e-33
ref|NP_190052.1| putative protein; protein id: At3g44660.1 [Arab... 141 5e-33
gb|AAN72014.1| putative protein [Arabidopsis thaliana] 139 2e-32
ref|NP_190054.1| putative protein; protein id: At3g44680.1 [Arab... 139 2e-32
gb|AAL33655.1|AF440228_1 histone deacetylase [Zea mays] 137 1e-31
>ref|NP_190035.1| putative protein; protein id: At3g44490.1 [Arabidopsis thaliana]
gi|11357433|pir||T48929 hypothetical protein F14L2.40 -
Arabidopsis thaliana gi|7635471|emb|CAB88531.1| putative
protein [Arabidopsis thaliana]
Length = 158
Score = 141 bits (355), Expect = 5e-33
Identities = 62/80 (77%), Positives = 74/80 (92%)
Frame = -3
Query: 521 GHIENLNSKSYLSTIKMQVLENLRCIPHAPSVQLPEVPPDFYIPDFDEDEQNPDERIDQH 342
GHIENLN+KSY+S+IK+Q+LENLR I HAPSVQ+ EVPPDFYIPDFDEDEQNPD R+DQ
Sbjct: 77 GHIENLNTKSYISSIKVQILENLRYIQHAPSVQMQEVPPDFYIPDFDEDEQNPDVRVDQR 136
Query: 341 TQDQHIQRDDEYYEGDNDND 282
++D+ IQRDDEY++GDNDND
Sbjct: 137 SRDKQIQRDDEYFDGDNDND 156
>ref|NP_190052.1| putative protein; protein id: At3g44660.1 [Arabidopsis thaliana]
gi|11358078|pir||T47441 hypothetical protein T18B22.60 -
Arabidopsis thaliana gi|6967114|emb|CAB72468.1| putative
protein [Arabidopsis thaliana]
Length = 142
Score = 141 bits (355), Expect = 5e-33
Identities = 62/80 (77%), Positives = 74/80 (92%)
Frame = -3
Query: 521 GHIENLNSKSYLSTIKMQVLENLRCIPHAPSVQLPEVPPDFYIPDFDEDEQNPDERIDQH 342
GHIENLN+KSY+S+IK+Q+LENLR I HAPSVQ+ EVPPDFYIPDFDEDEQNPD R+DQ
Sbjct: 61 GHIENLNTKSYISSIKVQILENLRYIQHAPSVQMQEVPPDFYIPDFDEDEQNPDVRVDQR 120
Query: 341 TQDQHIQRDDEYYEGDNDND 282
++D+ IQRDDEY++GDNDND
Sbjct: 121 SRDKQIQRDDEYFDGDNDND 140
>gb|AAN72014.1| putative protein [Arabidopsis thaliana]
Length = 426
Score = 139 bits (351), Expect = 2e-32
Identities = 62/80 (77%), Positives = 73/80 (90%)
Frame = -3
Query: 521 GHIENLNSKSYLSTIKMQVLENLRCIPHAPSVQLPEVPPDFYIPDFDEDEQNPDERIDQH 342
GHIENLN+KSY+S+IK+Q+LENLR I HAPSVQ+ EVPPDFYIPDFDEDEQNPD R DQ
Sbjct: 345 GHIENLNTKSYISSIKVQILENLRYIQHAPSVQMQEVPPDFYIPDFDEDEQNPDVRADQR 404
Query: 341 TQDQHIQRDDEYYEGDNDND 282
++D+ IQRDDEY++GDNDND
Sbjct: 405 SRDKQIQRDDEYFDGDNDND 424
>ref|NP_190054.1| putative protein; protein id: At3g44680.1 [Arabidopsis thaliana]
gi|11278171|pir||T47443 hypothetical protein T18B22.80 -
Arabidopsis thaliana gi|6967116|emb|CAB72470.1| putative
protein [Arabidopsis thaliana]
Length = 419
Score = 139 bits (351), Expect = 2e-32
Identities = 62/80 (77%), Positives = 73/80 (90%)
Frame = -3
Query: 521 GHIENLNSKSYLSTIKMQVLENLRCIPHAPSVQLPEVPPDFYIPDFDEDEQNPDERIDQH 342
GHIENLN+KSY+S+IK+Q+LENLR I HAPSVQ+ EVPPDFYIPDFDEDEQNPD R DQ
Sbjct: 338 GHIENLNTKSYISSIKVQILENLRYIQHAPSVQMQEVPPDFYIPDFDEDEQNPDVRADQR 397
Query: 341 TQDQHIQRDDEYYEGDNDND 282
++D+ IQRDDEY++GDNDND
Sbjct: 398 SRDKQIQRDDEYFDGDNDND 417
>gb|AAL33655.1|AF440228_1 histone deacetylase [Zea mays]
Length = 430
Score = 137 bits (344), Expect = 1e-31
Identities = 61/82 (74%), Positives = 73/82 (88%)
Frame = -3
Query: 518 HIENLNSKSYLSTIKMQVLENLRCIPHAPSVQLPEVPPDFYIPDFDEDEQNPDERIDQHT 339
+++NLNSK+YLS+IK+QV+E+LR I HAP VQ+ EVPPDFYIPDFDEDE +PDER+DQHT
Sbjct: 346 NMDNLNSKTYLSSIKVQVMESLRYIQHAPGVQMQEVPPDFYIPDFDEDELDPDERVDQHT 405
Query: 338 QDQHIQRDDEYYEGDNDNDQMD 273
QD+ I RDDEYYEGDNDND D
Sbjct: 406 QDKQIHRDDEYYEGDNDNDHDD 427
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,265,641
Number of Sequences: 1393205
Number of extensions: 8785690
Number of successful extensions: 38356
Number of sequences better than 10.0: 181
Number of HSP's better than 10.0 without gapping: 30240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36708
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
