Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008422A_C01 KMC008422A_c01
(460 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173694.1| unknown protein; protein id: At1g22800.1 [Arabi... 116 1e-25
emb|CAC36076.1| dJ842G6.1.1 (novel protein) [Homo sapiens] 76 2e-13
ref|NP_077025.1| chromosome 20 open reading frame 7 [Homo sapien... 76 2e-13
ref|XP_215857.1| similar to dJ842G6.1.1 (novel protein) [Homo sa... 75 3e-13
ref|NP_081369.1| RIKEN cDNA 2310003L22 [Mus musculus] gi|1284372... 75 3e-13
>ref|NP_173694.1| unknown protein; protein id: At1g22800.1 [Arabidopsis thaliana]
Length = 355
Score = 116 bits (291), Expect = 1e-25
Identities = 55/68 (80%), Positives = 62/68 (90%)
Frame = -3
Query: 428 QILKRDTALATAAIYDSMFAEEDGTVPATFQVIYMTGWREHPSQQKAKRRGSATVSFTDI 249
+IL R+TA+ATAAIYDSMFA EDGT+PATFQVIYMTGWREH S +AKRRGSATVSFTD+
Sbjct: 288 KILNRETAVATAAIYDSMFATEDGTIPATFQVIYMTGWREHSSHPQAKRRGSATVSFTDL 347
Query: 248 QKQFGSQN 225
QKQFG Q+
Sbjct: 348 QKQFGGQS 355
>emb|CAC36076.1| dJ842G6.1.1 (novel protein) [Homo sapiens]
Length = 236
Score = 75.9 bits (185), Expect = 2e-13
Identities = 34/61 (55%), Positives = 44/61 (71%)
Frame = -3
Query: 425 ILKRDTALATAAIYDSMFAEEDGTVPATFQVIYMTGWREHPSQQKAKRRGSATVSFTDIQ 246
+L RDT LA AA+Y M+ EDG+VPAT+Q+ YM GW+ H SQ + RGSATVSF ++
Sbjct: 164 LLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIGWKYHESQARPAERGSATVSFGELG 223
Query: 245 K 243
K
Sbjct: 224 K 224
>ref|NP_077025.1| chromosome 20 open reading frame 7 [Homo sapiens]
gi|10438664|dbj|BAB15305.1| unnamed protein product
[Homo sapiens] gi|13543669|gb|AAH05984.1|AAH05984
hypothetical protein FLJ22324 [Homo sapiens]
Length = 158
Score = 75.9 bits (185), Expect = 2e-13
Identities = 34/61 (55%), Positives = 44/61 (71%)
Frame = -3
Query: 425 ILKRDTALATAAIYDSMFAEEDGTVPATFQVIYMTGWREHPSQQKAKRRGSATVSFTDIQ 246
+L RDT LA AA+Y M+ EDG+VPAT+Q+ YM GW+ H SQ + RGSATVSF ++
Sbjct: 86 LLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIGWKYHESQARPAERGSATVSFGELG 145
Query: 245 K 243
K
Sbjct: 146 K 146
>ref|XP_215857.1| similar to dJ842G6.1.1 (novel protein) [Homo sapiens] [Rattus
norvegicus]
Length = 278
Score = 75.1 bits (183), Expect = 3e-13
Identities = 32/61 (52%), Positives = 45/61 (73%)
Frame = -3
Query: 425 ILKRDTALATAAIYDSMFAEEDGTVPATFQVIYMTGWREHPSQQKAKRRGSATVSFTDIQ 246
+L RDT LA AA+Y M++ EDG++PAT+Q+ +M GW+ H SQ + RGSATVSF D+
Sbjct: 208 LLHRDTMLAAAAVYREMYSNEDGSIPATYQIYHMIGWKYHDSQARPAERGSATVSFGDLA 267
Query: 245 K 243
+
Sbjct: 268 R 268
>ref|NP_081369.1| RIKEN cDNA 2310003L22 [Mus musculus] gi|12843722|dbj|BAB26088.1|
unnamed protein product [Mus musculus]
gi|13542869|gb|AAH05630.1| RIKEN cDNA 2310003L22 gene
[Mus musculus]
Length = 156
Score = 75.1 bits (183), Expect = 3e-13
Identities = 33/61 (54%), Positives = 44/61 (72%)
Frame = -3
Query: 425 ILKRDTALATAAIYDSMFAEEDGTVPATFQVIYMTGWREHPSQQKAKRRGSATVSFTDIQ 246
+L RDT LA AA+Y M+ EDG++PATFQ+ +M GW+ H SQ + RGSATVSF ++
Sbjct: 86 LLHRDTMLAAAAVYREMYRNEDGSIPATFQIYHMIGWKYHDSQARPAERGSATVSFGELA 145
Query: 245 K 243
K
Sbjct: 146 K 146
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 378,193,478
Number of Sequences: 1393205
Number of extensions: 7756185
Number of successful extensions: 13705
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 13465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13700
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
