Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008409A_C01 KMC008409A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182273.1| putative fumarase; protein id: At2g47510.1, sup... 170 1e-41
ref|NP_199908.1| fumarate hydratase; protein id: At5g50950.1, su... 169 2e-41
pir||T07374 fumarate hydratase (EC 4.2.1.2) FUM1 - potato gi|148... 168 5e-41
gb|AAB39989.1| fumarase; fumarate hydratase [Arabidopsis thaliana] 163 2e-39
pir||UFHUM fumarate hydratase (EC 4.2.1.2) precursor, mitochondr... 129 3e-29
>ref|NP_182273.1| putative fumarase; protein id: At2g47510.1, supported by cDNA:
gi_15809967, supported by cDNA: gi_17064767, supported
by cDNA: gi_1769567 [Arabidopsis thaliana]
gi|7436829|pir||T00433 fumarate hydratase (EC 4.2.1.2) -
Arabidopsis thaliana gi|2443751|gb|AAB71399.1| fumarase
[Arabidopsis thaliana] gi|2529676|gb|AAC62859.1|
putative fumarase [Arabidopsis thaliana]
gi|15809968|gb|AAL06911.1| At2g47510/T30B22.19
[Arabidopsis thaliana] gi|17064768|gb|AAL32538.1|
putative fumarase [Arabidopsis thaliana]
gi|28059023|gb|AAO29979.1| putative fumarase
[Arabidopsis thaliana]
Length = 492
Score = 170 bits (430), Expect = 1e-41
Identities = 85/96 (88%), Positives = 92/96 (95%)
Frame = -2
Query: 567 LLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKA 388
LLHS+RL+ DASASFEKNCVRGI+ANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKA
Sbjct: 397 LLHSVRLIADASASFEKNCVRGIEANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKA 456
Query: 387 HKEGTTLKEAALKLGVLSSEDFDNLVVPEKMIGPSE 280
HKEG TLKEAAL LGVL++E+FD LVVPEKMIGPS+
Sbjct: 457 HKEGCTLKEAALNLGVLTAEEFDTLVVPEKMIGPSD 492
>ref|NP_199908.1| fumarate hydratase; protein id: At5g50950.1, supported by cDNA:
gi_15529146 [Arabidopsis thaliana]
gi|9758242|dbj|BAB08741.1| fumarate hydratase
[Arabidopsis thaliana] gi|15529147|gb|AAK97668.1|
AT5g50950/K3K7_11 [Arabidopsis thaliana]
gi|21360525|gb|AAM47378.1| AT5g50950/K3K7_11
[Arabidopsis thaliana]
Length = 499
Score = 169 bits (429), Expect = 2e-41
Identities = 84/96 (87%), Positives = 92/96 (95%)
Frame = -2
Query: 567 LLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKA 388
LLHS+RL+ DASASFEKNCVRGI+ANRERISKLLHESLMLVTSLNPKIGYDNAAAVAK+A
Sbjct: 404 LLHSIRLIADASASFEKNCVRGIEANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKRA 463
Query: 387 HKEGTTLKEAALKLGVLSSEDFDNLVVPEKMIGPSE 280
HKEG TLK AA+KLGVL+SE+FD LVVPEKMIGPS+
Sbjct: 464 HKEGCTLKHAAMKLGVLTSEEFDTLVVPEKMIGPSD 499
>pir||T07374 fumarate hydratase (EC 4.2.1.2) FUM1 - potato
gi|1488652|emb|CAA62817.1| fumarase [Solanum tuberosum]
Length = 493
Score = 168 bits (425), Expect = 5e-41
Identities = 84/96 (87%), Positives = 92/96 (95%)
Frame = -2
Query: 567 LLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKA 388
LLHS+RLLGDASASFEKNCVR IQANR+RI+KLLHESLMLVT LNPKIGYDNAAAVAKKA
Sbjct: 398 LLHSVRLLGDASASFEKNCVRDIQANRDRIAKLLHESLMLVTCLNPKIGYDNAAAVAKKA 457
Query: 387 HKEGTTLKEAALKLGVLSSEDFDNLVVPEKMIGPSE 280
HKEGT+LKEAAL LGVL+SE+FD LVVPEKMIGP++
Sbjct: 458 HKEGTSLKEAALNLGVLTSEEFDQLVVPEKMIGPTD 493
>gb|AAB39989.1| fumarase; fumarate hydratase [Arabidopsis thaliana]
Length = 491
Score = 163 bits (412), Expect = 2e-39
Identities = 83/96 (86%), Positives = 90/96 (93%)
Frame = -2
Query: 567 LLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKA 388
LLHS+RL+ DASASFEKNCVRGI+ANRERISKLLHESLMLVTSLN KIG DNAAAVAKKA
Sbjct: 396 LLHSVRLIADASASFEKNCVRGIEANRERISKLLHESLMLVTSLNRKIGCDNAAAVAKKA 455
Query: 387 HKEGTTLKEAALKLGVLSSEDFDNLVVPEKMIGPSE 280
HKEG TLKEAAL LGVL++E+FD LVVPEKMIGPS+
Sbjct: 456 HKEGCTLKEAALNLGVLTAEEFDTLVVPEKMIGPSD 491
>pir||UFHUM fumarate hydratase (EC 4.2.1.2) precursor, mitochondrial - human
(fragment) gi|182794|gb|AAA52483.1| fumarase precursor
(EC 4.2.1.2)
Length = 468
Score = 129 bits (324), Expect = 3e-29
Identities = 63/94 (67%), Positives = 77/94 (81%)
Frame = -2
Query: 567 LLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKA 388
+LHS RLLGDAS SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD AA +AK A
Sbjct: 374 VLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTA 433
Query: 387 HKEGTTLKEAALKLGVLSSEDFDNLVVPEKMIGP 286
HK G+TLKE A++LG L++E FD V P+ M+GP
Sbjct: 434 HKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGP 467
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,515,161
Number of Sequences: 1393205
Number of extensions: 8597703
Number of successful extensions: 19182
Number of sequences better than 10.0: 227
Number of HSP's better than 10.0 without gapping: 18769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19175
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
