Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008383A_C01 KMC008383A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T08905 hypothetical protein T32A16.30 - Arabidopsis thalian... 262 1e-69
gb|AAH44390.1| Unknown (protein for MGC:55404) [Danio rerio] 190 1e-47
ref|XP_234475.1| similar to RIKEN cDNA 5730410I19 [Mus musculus]... 184 9e-46
ref|XP_127069.2| RIKEN cDNA 5730410I19 [Mus musculus] gi|2635316... 181 5e-45
emb|CAD62577.1| unnamed protein product [Homo sapiens] 181 6e-45
>pir||T08905 hypothetical protein T32A16.30 - Arabidopsis thaliana
gi|4972090|emb|CAB43886.1| putative protein [Arabidopsis
thaliana] gi|7269235|emb|CAB81304.1| putative protein
[Arabidopsis thaliana]
Length = 443
Score = 262 bits (670), Expect(2) = 1e-69
Identities = 111/144 (77%), Positives = 126/144 (87%)
Frame = +3
Query: 150 LEEEEERELVADLIVGGDAGKECTYNKGYMKRQAIFSCLTCTPDGNAGVCTACSLSCHDG 329
+E + EL ADL++GGD G ECT+ KGYMKRQAIFSC+TCTP+GNAG+CTAC LSCHDG
Sbjct: 20 IERLDAEELAADLVLGGDEGDECTFPKGYMKRQAIFSCITCTPEGNAGICTACCLSCHDG 79
Query: 330 HQVVELWTKRNFRCDCGNSKFGEFYCKIFPSKDVENSENAYNHNFKGLYCTCGLPYPGLD 509
H+++ELWTKRNFRCDCGNSKFG CK+ PSKD+ENSEN+YNHNFKGLYCTC PYP +
Sbjct: 80 HELLELWTKRNFRCDCGNSKFGTLACKLLPSKDIENSENSYNHNFKGLYCTCDRPYPDPN 139
Query: 510 VEEQVEMIQCCLCEDWFHVEHLGL 581
VEEQVEMIQCCLCEDWFH EHLGL
Sbjct: 140 VEEQVEMIQCCLCEDWFHEEHLGL 163
Score = 22.7 bits (47), Expect(2) = 1e-69
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +2
Query: 113 DEAEQAITIGEYI 151
DEAE ITI EYI
Sbjct: 8 DEAEGTITINEYI 20
>gb|AAH44390.1| Unknown (protein for MGC:55404) [Danio rerio]
Length = 410
Score = 190 bits (482), Expect = 1e-47
Identities = 82/145 (56%), Positives = 104/145 (71%), Gaps = 2/145 (1%)
Frame = +3
Query: 150 LEEEEERELVADLIVGGDAGKECTYNKGYMKRQAIFSCLTCTPDGN--AGVCTACSLSCH 323
LEE+EE E A ++GG ++C+Y +GY++RQA+++C TCTP G AG+C ACS CH
Sbjct: 17 LEEDEELENEASAVLGGSDSEKCSYPEGYVRRQALYACNTCTPKGGEPAGICLACSYKCH 76
Query: 324 DGHQVVELWTKRNFRCDCGNSKFGEFYCKIFPSKDVENSENAYNHNFKGLYCTCGLPYPG 503
+GH + EL+TKRNFRCDCGN KFG+ CK+F K+ NS N Y+HNF GLYCTC PYP
Sbjct: 77 EGHDLFELYTKRNFRCDCGNDKFGDMECKLFADKEKVNSGNKYSHNFFGLYCTCDRPYPD 136
Query: 504 LDVEEQVEMIQCCLCEDWFHVEHLG 578
+ E EMIQC +CEDW H HLG
Sbjct: 137 PEDEVSDEMIQCIVCEDWLHGRHLG 161
>ref|XP_234475.1| similar to RIKEN cDNA 5730410I19 [Mus musculus] [Rattus norvegicus]
Length = 425
Score = 184 bits (466), Expect = 9e-46
Identities = 83/156 (53%), Positives = 106/156 (67%), Gaps = 2/156 (1%)
Frame = +3
Query: 117 KLSRLLPSASTLEEEEERELVADLIVGGDAGKECTYNKGYMKRQAIFSCLTCTPDGN--A 290
+L ++ LEE+EE E A ++GG ++C+Y++G +KRQA+++C TCTP+G A
Sbjct: 13 ELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYACSTCTPEGEEPA 72
Query: 291 GVCTACSLSCHDGHQVVELWTKRNFRCDCGNSKFGEFYCKIFPSKDVENSENAYNHNFKG 470
G+C ACS CH H++ EL+TKRNFRCDCGNSKF CK+FP K NS N YN NF G
Sbjct: 73 GICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKSKVNSCNKYNDNFFG 132
Query: 471 LYCTCGLPYPGLDVEEQVEMIQCCLCEDWFHVEHLG 578
LYC C PYP + E EMIQC +CEDWFH HLG
Sbjct: 133 LYCICKRPYPDPEDEVPDEMIQCVVCEDWFHGRHLG 168
>ref|XP_127069.2| RIKEN cDNA 5730410I19 [Mus musculus] gi|26353164|dbj|BAC40212.1|
unnamed protein product [Mus musculus]
Length = 425
Score = 181 bits (460), Expect = 5e-45
Identities = 82/156 (52%), Positives = 105/156 (66%), Gaps = 2/156 (1%)
Frame = +3
Query: 117 KLSRLLPSASTLEEEEERELVADLIVGGDAGKECTYNKGYMKRQAIFSCLTCTPDGN--A 290
+L ++ LEE+EE E A ++GG ++C+Y++G + RQA+++C TCTP+G A
Sbjct: 13 ELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVGRQALYACSTCTPEGEEPA 72
Query: 291 GVCTACSLSCHDGHQVVELWTKRNFRCDCGNSKFGEFYCKIFPSKDVENSENAYNHNFKG 470
G+C ACS CH H++ EL+TKRNFRCDCGNSKF CK+FP K NS N YN NF G
Sbjct: 73 GICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKSKVNSCNKYNDNFFG 132
Query: 471 LYCTCGLPYPGLDVEEQVEMIQCCLCEDWFHVEHLG 578
LYC C PYP + E EMIQC +CEDWFH HLG
Sbjct: 133 LYCVCKRPYPDPEDEVPDEMIQCVVCEDWFHGRHLG 168
>emb|CAD62577.1| unnamed protein product [Homo sapiens]
Length = 423
Score = 181 bits (459), Expect = 6e-45
Identities = 82/156 (52%), Positives = 105/156 (66%), Gaps = 2/156 (1%)
Frame = +3
Query: 117 KLSRLLPSASTLEEEEERELVADLIVGGDAGKECTYNKGYMKRQAIFSCLTCTPDGN--A 290
+L ++ LEE+EE E A ++GG ++C+Y++G +KRQA+++C TCTP+G A
Sbjct: 11 ELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYACSTCTPEGEEPA 70
Query: 291 GVCTACSLSCHDGHQVVELWTKRNFRCDCGNSKFGEFYCKIFPSKDVENSENAYNHNFKG 470
G+C ACS CH H++ EL+TKRNFRCDCGNSKF CK+ P K NS N YN NF G
Sbjct: 71 GICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLLPDKAKVNSGNKYNDNFFG 130
Query: 471 LYCTCGLPYPGLDVEEQVEMIQCCLCEDWFHVEHLG 578
LYC C PYP + E EMIQC +CEDWFH HLG
Sbjct: 131 LYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLG 166
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 545,637,020
Number of Sequences: 1393205
Number of extensions: 12823916
Number of successful extensions: 38628
Number of sequences better than 10.0: 173
Number of HSP's better than 10.0 without gapping: 36185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38493
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
