Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008382A_C01 KMC008382A_c01
(472 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187112.1| KH domain protein; protein id: At3g04610.1, sup... 88 5e-17
gb|AAL31692.1|AC092390_13 putative RNA binding protein [Oryza sa... 72 4e-12
pir||T34507 cutical collagen 6 - Caenorhabditis elegans 42 0.004
ref|NP_197267.1| glycine/proline-rich protein; protein id: At5g1... 40 0.009
pir||A41051 spore coat protein precursor - Bacillus subtilis 39 0.027
>ref|NP_187112.1| KH domain protein; protein id: At3g04610.1, supported by cDNA:
gi_17979248 [Arabidopsis thaliana]
gi|6175183|gb|AAF04909.1|AC011437_24 putative
RNA-binding protein [Arabidopsis thaliana]
gi|17979249|gb|AAL49941.1| AT3g04610/F7O18_9
[Arabidopsis thaliana]
Length = 577
Score = 87.8 bits (216), Expect = 5e-17
Identities = 44/75 (58%), Positives = 51/75 (67%)
Frame = -2
Query: 471 ISGTAAQVQTAQQLIQNFMAEAAQAQPAPAQPPPVGPPDPGYNSYPAHGSVYTSPPSHPG 292
+SGT +QVQTA QLIQNFMAEA PAPAQP V P GYN Y HGSVY + P++P
Sbjct: 507 VSGTGSQVQTAVQLIQNFMAEAGA--PAPAQPQTVAPEQQGYNPYATHGSVYAAAPTNP- 563
Query: 291 HAGGYGSAYGANYGY 247
GGY + Y + YGY
Sbjct: 564 -PGGYATDYSSGYGY 577
>gb|AAL31692.1|AC092390_13 putative RNA binding protein [Oryza sativa]
Length = 510
Score = 71.6 bits (174), Expect = 4e-12
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Frame = -2
Query: 471 ISGTAAQVQTAQQLIQNFMAEAAQAQPAPAQPPPVGPPDPGYNSYP-----AHGSVYTSP 307
I G+A+QVQTAQQL+QNFMAEA Q P PA PP D Y SYP ++GS +
Sbjct: 431 IIGSASQVQTAQQLVQNFMAEAPQGPPPPASNPPAPAVDLSYGSYPPPYGASYGSAASGA 490
Query: 306 PSHPGHAGGYGSAYGANYGY 247
P + G YG +YGY
Sbjct: 491 GPAPHNGGSYGGTTYPSYGY 510
Score = 30.8 bits (68), Expect = 7.4
Identities = 17/41 (41%), Positives = 21/41 (50%)
Frame = -2
Query: 405 AQAQPAPAQPPPVGPPDPGYNSYPAHGSVYTSPPSHPGHAG 283
AQ + A A P P GPP P + P+H PP PG+ G
Sbjct: 292 AQREQAMAAPQPWGPPQP-WGPPPSH-----LPPGGPGYGG 326
>pir||T34507 cutical collagen 6 - Caenorhabditis elegans
Length = 387
Score = 41.6 bits (96), Expect = 0.004
Identities = 36/95 (37%), Positives = 40/95 (41%)
Frame = -2
Query: 396 QPAPAQPPPVGPPDPGYNSYPAHGSVYTSPPSHPGHAGGYGSAYGANYGY*SGQCH*SHH 217
Q AP +P P+GPP P N P G Y PP PG +G G A +G
Sbjct: 255 QGAPGKPGPIGPPGPKGNPGP-DGQSYQGPPGPPGDSGTPGHEGRAGPNGPAGP-----P 308
Query: 216 C*NVESWDCISCNNFTITRTLCFMFCF*IYKNCDF 112
N E DC C R L F F F IYK C F
Sbjct: 309 GDNGEKGDCGHC-----PRKLPFTF-FKIYKFCCF 337
>ref|NP_197267.1| glycine/proline-rich protein; protein id: At5g17650.1 [Arabidopsis
thaliana] gi|11357316|pir||T51469 glycine/proline-rich
protein - Arabidopsis thaliana
gi|9755790|emb|CAC01909.1| glycine/proline-rich protein
[Arabidopsis thaliana]
Length = 173
Score = 40.4 bits (93), Expect = 0.009
Identities = 25/60 (41%), Positives = 29/60 (47%), Gaps = 3/60 (5%)
Frame = -2
Query: 387 PAQPPPVGPPDPGY--NSYPAHGSVYTSPPSHPG-HAGGYGSAYGANYGY*SGQCH*SHH 217
PA PP G P GY + YP+HG PSH G H GG G+ +G H SHH
Sbjct: 67 PAGYPPAGYPPAGYPAHGYPSHG---YPRPSHSGHHHGGIGAIIAGGVAAAAGAHHMSHH 123
>pir||A41051 spore coat protein precursor - Bacillus subtilis
Length = 82
Score = 38.9 bits (89), Expect = 0.027
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Frame = -2
Query: 396 QPAPAQPPPVGPPDPGYNSYPAHGSV-----YTSPPSHP--GHAGGYGSAYGANYGY 247
+P P PP P P Y YP + PP +P G+ GGYG YG YGY
Sbjct: 26 RPRPPFYPPYYYPRPYYPFYPFYPRPPYYYPRPRPPYYPWYGYGGGYGGGYGGGYGY 82
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,217,712
Number of Sequences: 1393205
Number of extensions: 10123309
Number of successful extensions: 82840
Number of sequences better than 10.0: 654
Number of HSP's better than 10.0 without gapping: 50642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74775
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
