Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008378A_C01 KMC008378A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD09518.1| NTGP4 [Nicotiana tabacum] 194 2e-52
ref|NP_564431.1| expressed protein; protein id: At1g33970.1, sup... 173 3e-47
gb|AAN60299.1| unknown [Arabidopsis thaliana] 173 3e-47
pir||D86463 hypothetical protein F12G12.21 - Arabidopsis thalian... 173 3e-47
ref|NP_174655.1| AIG1-like protein; protein id: At1g33930.1 [Ara... 172 1e-44
>gb|AAD09518.1| NTGP4 [Nicotiana tabacum]
Length = 344
Score = 194 bits (492), Expect(2) = 2e-52
Identities = 93/144 (64%), Positives = 118/144 (81%)
Frame = +2
Query: 149 LGKKVFKSDYSSSGVTSRCERHTTELKDGQTVNVIDTPGLFDMSAESEFIGKEIVNCIRL 328
LG+K F+S SS+GVTS CE T L+DGQ ++VIDTPGLFD SAE EFIG EIV CI +
Sbjct: 43 LGRKAFRSMSSSAGVTSTCELQRTVLEDGQILDVIDTPGLFDFSAEPEFIGNEIVKCINM 102
Query: 329 ARDGIHAVLVVFSVQSRFSKEEETGLRSLQMLFGEKIADYMIVVFTGGDVLENRKKTLQD 508
A+DGIHAVLVV SV++RFS+EE+ ++SL+ FG KI+DYM++VFTGGD LE+ ++TL+D
Sbjct: 103 AKDGIHAVLVVLSVRTRFSREEQAAVQSLREFFGGKISDYMVLVFTGGDDLEDNEETLED 162
Query: 509 YLGSSCPEPVKDILSLCKNRCVLF 580
YLG CPEP+KDIL++C NR VLF
Sbjct: 163 YLGRDCPEPLKDILAMCGNRRVLF 186
Score = 33.9 bits (76), Expect(2) = 2e-52
Identities = 19/39 (48%), Positives = 24/39 (60%)
Frame = +1
Query: 34 GRKSFDDDGELTYPNNEGLTLVWVGRTGNGESATAISMI 150
G + DD E + N TLV VGRTGNG+SAT S++
Sbjct: 7 GGSAISDDWE--FAANGARTLVLVGRTGNGKSATGNSIL 43
>ref|NP_564431.1| expressed protein; protein id: At1g33970.1, supported by cDNA:
37204. [Arabidopsis thaliana]
Length = 342
Score = 173 bits (438), Expect(2) = 3e-47
Identities = 86/144 (59%), Positives = 108/144 (74%)
Frame = +2
Query: 149 LGKKVFKSDYSSSGVTSRCERHTTELKDGQTVNVIDTPGLFDMSAESEFIGKEIVNCIRL 328
LG+K F+S + GVTS CE +DG +NV+DTPGLFD+S ++FIGKEIV CI L
Sbjct: 45 LGRKAFRSRARTVGVTSTCESQRVVQEDGDIINVVDTPGLFDLSTAADFIGKEIVRCISL 104
Query: 329 ARDGIHAVLVVFSVQSRFSKEEETGLRSLQMLFGEKIADYMIVVFTGGDVLENRKKTLQD 508
A DGIHA+L+VFSV+ R ++EE+T L LQ LFG KIADYMIVVFTGGD LE ++TL++
Sbjct: 105 AEDGIHAILLVFSVR-RLAEEEQTVLSFLQALFGSKIADYMIVVFTGGDELEENEETLEE 163
Query: 509 YLGSSCPEPVKDILSLCKNRCVLF 580
YL CPE +K+IL +C NR VLF
Sbjct: 164 YLADYCPEFLKEILGICDNRLVLF 187
Score = 37.4 bits (85), Expect(2) = 3e-47
Identities = 19/39 (48%), Positives = 24/39 (60%)
Frame = +1
Query: 34 GRKSFDDDGELTYPNNEGLTLVWVGRTGNGESATAISMI 150
G +DD E +N TLV VGRTGNG+SAT S++
Sbjct: 7 GGDMMEDDWEFASSSNPKRTLVLVGRTGNGKSATGNSIL 45
>gb|AAN60299.1| unknown [Arabidopsis thaliana]
Length = 337
Score = 173 bits (438), Expect(2) = 3e-47
Identities = 86/144 (59%), Positives = 108/144 (74%)
Frame = +2
Query: 149 LGKKVFKSDYSSSGVTSRCERHTTELKDGQTVNVIDTPGLFDMSAESEFIGKEIVNCIRL 328
LG+K F+S + GVTS CE +DG +NV+DTPGLFD+S ++FIGKEIV CI L
Sbjct: 40 LGRKAFRSRARTVGVTSTCESQRVVQEDGDIINVVDTPGLFDLSTAADFIGKEIVRCISL 99
Query: 329 ARDGIHAVLVVFSVQSRFSKEEETGLRSLQMLFGEKIADYMIVVFTGGDVLENRKKTLQD 508
A DGIHA+L+VFSV+ R ++EE+T L LQ LFG KIADYMIVVFTGGD LE ++TL++
Sbjct: 100 AEDGIHAILLVFSVR-RLAEEEQTVLSFLQALFGSKIADYMIVVFTGGDELEENEETLEE 158
Query: 509 YLGSSCPEPVKDILSLCKNRCVLF 580
YL CPE +K+IL +C NR VLF
Sbjct: 159 YLADYCPEFLKEILGICDNRLVLF 182
Score = 37.4 bits (85), Expect(2) = 3e-47
Identities = 19/39 (48%), Positives = 24/39 (60%)
Frame = +1
Query: 34 GRKSFDDDGELTYPNNEGLTLVWVGRTGNGESATAISMI 150
G +DD E +N TLV VGRTGNG+SAT S++
Sbjct: 2 GGDMMEDDWEFASSSNPKRTLVLVGRTGNGKSATGNSIL 40
>pir||D86463 hypothetical protein F12G12.21 - Arabidopsis thaliana
gi|10086478|gb|AAG12538.1|AC015446_19 Similar to AIG1
protein [Arabidopsis thaliana]
gi|10092443|gb|AAG12846.1|AC079286_3 disease resistance
protein AIG1; 5333-4002 [Arabidopsis thaliana]
gi|21593218|gb|AAM65167.1| AIG1-like protein, 5' partial
[Arabidopsis thaliana]
Length = 337
Score = 173 bits (438), Expect(2) = 3e-47
Identities = 86/144 (59%), Positives = 108/144 (74%)
Frame = +2
Query: 149 LGKKVFKSDYSSSGVTSRCERHTTELKDGQTVNVIDTPGLFDMSAESEFIGKEIVNCIRL 328
LG+K F+S + GVTS CE +DG +NV+DTPGLFD+S ++FIGKEIV CI L
Sbjct: 40 LGRKAFRSRARTVGVTSTCESQRVVQEDGDIINVVDTPGLFDLSTAADFIGKEIVRCISL 99
Query: 329 ARDGIHAVLVVFSVQSRFSKEEETGLRSLQMLFGEKIADYMIVVFTGGDVLENRKKTLQD 508
A DGIHA+L+VFSV+ R ++EE+T L LQ LFG KIADYMIVVFTGGD LE ++TL++
Sbjct: 100 AEDGIHAILLVFSVR-RLAEEEQTVLSFLQALFGSKIADYMIVVFTGGDELEENEETLEE 158
Query: 509 YLGSSCPEPVKDILSLCKNRCVLF 580
YL CPE +K+IL +C NR VLF
Sbjct: 159 YLADYCPEFLKEILGICDNRLVLF 182
Score = 37.4 bits (85), Expect(2) = 3e-47
Identities = 19/39 (48%), Positives = 24/39 (60%)
Frame = +1
Query: 34 GRKSFDDDGELTYPNNEGLTLVWVGRTGNGESATAISMI 150
G +DD E +N TLV VGRTGNG+SAT S++
Sbjct: 2 GGDMMEDDWEFASSSNPKRTLVLVGRTGNGKSATGNSIL 40
>ref|NP_174655.1| AIG1-like protein; protein id: At1g33930.1 [Arabidopsis thaliana]
gi|25373411|pir||B86463 AIG1-like protein, 26931-23735
[imported] - Arabidopsis thaliana
gi|12324498|gb|AAG52203.1|AC022288_2 AIG1-like protein;
26931-23735 [Arabidopsis thaliana]
Length = 336
Score = 172 bits (437), Expect(2) = 1e-44
Identities = 82/144 (56%), Positives = 110/144 (75%)
Frame = +2
Query: 149 LGKKVFKSDYSSSGVTSRCERHTTELKDGQTVNVIDTPGLFDMSAESEFIGKEIVNCIRL 328
+G+KVF+S Y + GVT+RC+ DG +NVIDTPGLFD++ +EFI KEIVNC+ L
Sbjct: 56 IGRKVFESKYQAVGVTTRCKTFRAVTPDGPIINVIDTPGLFDLAVSAEFISKEIVNCLIL 115
Query: 329 ARDGIHAVLVVFSVQSRFSKEEETGLRSLQMLFGEKIADYMIVVFTGGDVLENRKKTLQD 508
AR+G+HAV++V S+ +R S+EEE L +LQMLFG KI DY+IVVFT GD+LE+R TL+D
Sbjct: 116 AREGLHAVVLVLSLSTRISQEEENALCTLQMLFGGKIVDYLIVVFTCGDMLEDRNMTLED 175
Query: 509 YLGSSCPEPVKDILSLCKNRCVLF 580
YL + CPE +K++L LC R V+F
Sbjct: 176 YLSNGCPEFLKNVLRLCGGRRVVF 199
Score = 28.9 bits (63), Expect(2) = 1e-44
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 52 DDGELTYPNNEGLTLVWVGRTGNGESATAISMI 150
D EL + +V VGRTGNG+SAT S+I
Sbjct: 24 DRWELPSASEPVKNVVLVGRTGNGKSATGNSII 56
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,681,085
Number of Sequences: 1393205
Number of extensions: 10286376
Number of successful extensions: 25937
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 25204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25876
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
