Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008347A_C01 KMC008347A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191051.1| putative protein; protein id: At3g54910.1 [Arab... 33 3.3
gb|AAD27961.1|AF110829_1 NADH dehydrogenase subunit 1 [Cotesia f... 31 9.5
gb|AAF78512.1|AF195210_1 photolyase [Pyrus pyrifolia] 31 9.5
>ref|NP_191051.1| putative protein; protein id: At3g54910.1 [Arabidopsis thaliana]
gi|7486334|pir||T06729 hypothetical protein F28P10.110 -
Arabidopsis thaliana gi|4678302|emb|CAB41093.1| putative
protein [Arabidopsis thaliana]
Length = 320
Score = 32.7 bits (73), Expect = 3.3
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = -3
Query: 559 VMEVLPYCPKLQTLDIEKLVYWHNYQEKWAHTKELVPECVSLHSYTLLYLETIKL---QG 389
++ +L LQ LD+ ++ Y N+ + H VPEC+ LL L+T+ L +G
Sbjct: 213 LVRLLKDSSNLQALDLSEMDYHENHDILYWHQPSTVPECM------LLSLQTLNLSAYRG 266
Query: 388 MYDDFDFTAYIL 353
++ D Y L
Sbjct: 267 TPEERDLAVYFL 278
>gb|AAD27961.1|AF110829_1 NADH dehydrogenase subunit 1 [Cotesia flavipes]
Length = 145
Score = 31.2 bits (69), Expect = 9.5
Identities = 15/45 (33%), Positives = 27/45 (59%), Gaps = 4/45 (8%)
Frame = -2
Query: 146 DMVICLLLQIMKDSYLKFSVFYLMNLMNMFNF----FPMNLYLVI 24
++V L++ IM ++ ++FYLMN FNF FP+ + ++I
Sbjct: 42 EVVFSLVILIMLNNINTLNLFYLMNFNKFFNFSMIYFPLMMIMII 86
>gb|AAF78512.1|AF195210_1 photolyase [Pyrus pyrifolia]
Length = 80
Score = 31.2 bits (69), Expect = 9.5
Identities = 14/36 (38%), Positives = 24/36 (65%)
Frame = -2
Query: 110 DSYLKFSVFYLMNLMNMFNFFPMNLYLVIFIKKKKK 3
D +++ +V +L L++ F + +N YL+ FI KKKK
Sbjct: 42 DCWVRSNVGWLEELLSCFYYNQINKYLLYFISKKKK 77
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,517,750
Number of Sequences: 1393205
Number of extensions: 10200731
Number of successful extensions: 21878
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21873
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
