Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008340A_C01 KMC008340A_c01
(443 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568090.1| putative protein; protein id: At5g01470.1, supp... 72 1e-12
emb|CAB81930.2| putative protein [Arabidopsis thaliana] 72 1e-12
pir||T48169 hypothetical protein T10O8.180 - Arabidopsis thalian... 58 2e-08
gb|AAK82446.1|AC091247_13 unknown protein [Oryza sativa] gi|1885... 54 6e-07
ref|XP_289987.1| similar to MHC class I pipi-G*01 [Pithecia pith... 32 1.4
>ref|NP_568090.1| putative protein; protein id: At5g01470.1, supported by cDNA:
250006. [Arabidopsis thaliana]
gi|21554308|gb|AAM63413.1| unknown [Arabidopsis
thaliana]
Length = 241
Score = 72.4 bits (176), Expect = 1e-12
Identities = 33/43 (76%), Positives = 36/43 (82%)
Frame = -3
Query: 438 DVVLPWPALSMSWRRRIGKEDESLFFDGCEKAGLEVKHLGSRV 310
D LP P MSWRRRIGK+DESLFF GCE+AGLEVKHLG+RV
Sbjct: 189 DTELPRPVFLMSWRRRIGKDDESLFFTGCEEAGLEVKHLGNRV 231
>emb|CAB81930.2| putative protein [Arabidopsis thaliana]
Length = 235
Score = 72.4 bits (176), Expect = 1e-12
Identities = 33/43 (76%), Positives = 36/43 (82%)
Frame = -3
Query: 438 DVVLPWPALSMSWRRRIGKEDESLFFDGCEKAGLEVKHLGSRV 310
D LP P MSWRRRIGK+DESLFF GCE+AGLEVKHLG+RV
Sbjct: 183 DTELPRPVFLMSWRRRIGKDDESLFFTGCEEAGLEVKHLGNRV 225
>pir||T48169 hypothetical protein T10O8.180 - Arabidopsis thaliana (fragment)
Length = 217
Score = 58.2 bits (139), Expect = 2e-08
Identities = 26/35 (74%), Positives = 28/35 (79%)
Frame = -3
Query: 438 DVVLPWPALSMSWRRRIGKEDESLFFDGCEKAGLE 334
D LP P MSWRRRIGK+DESLFF GCE+AGLE
Sbjct: 183 DTELPRPVFLMSWRRRIGKDDESLFFTGCEEAGLE 217
>gb|AAK82446.1|AC091247_13 unknown protein [Oryza sativa]
gi|18855059|gb|AAL79751.1|AC096687_15 unknown protein
[Oryza sativa]
Length = 206
Score = 53.5 bits (127), Expect = 6e-07
Identities = 28/44 (63%), Positives = 34/44 (76%)
Frame = -3
Query: 435 VVLPWPALSMSWRRRIGKEDESLFFDGCEKAGLEVKHLGSRVLL 304
V + +P MS RRRIGK D+SLFF+ CEKAGLEV+HLG+ V L
Sbjct: 159 VPVKFPIFLMSCRRRIGK-DQSLFFEECEKAGLEVQHLGALVYL 201
>ref|XP_289987.1| similar to MHC class I pipi-G*01 [Pithecia pithecia] [Mus musculus]
Length = 190
Score = 32.3 bits (72), Expect = 1.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 130 YSYQSQRCDNFFDLFYFLLVNTSSTKFISWLLC 32
+ Y Q C + LFYFLL N S T+ S ++C
Sbjct: 54 FGYYDQPCSSPLPLFYFLLENNSPTRTASIVMC 86
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 358,124,820
Number of Sequences: 1393205
Number of extensions: 6987991
Number of successful extensions: 15032
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15028
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 6655800768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
