Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008301A_C01 KMC008301A_c01
(465 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62630.1| unknown [Arabidopsis thaliana] 162 1e-39
ref|NP_565442.1| Expressed protein; protein id: At2g18840.1, sup... 162 1e-39
pir||T14086 hypothetical protein F9N11.110 - Arabidopsis thalian... 161 3e-39
ref|NP_567843.1| hypothetical protein common family; protein id:... 161 3e-39
dbj|BAB89791.1| P0677H08.6 [Oryza sativa (japonica cultivar-group)] 142 1e-33
>gb|AAM62630.1| unknown [Arabidopsis thaliana]
Length = 281
Score = 162 bits (411), Expect = 1e-39
Identities = 80/85 (94%), Positives = 84/85 (98%)
Frame = -1
Query: 465 GHIIFFQSLSLLGYCLFPLDVGALICMLKDHVILKVVVVCVTLAWSSWAAYPFMSSAVNP 286
GHIIFFQSLSLLGYCLFPLDVGA+ICMLKD+VILK+VVV VTLAWSSWAAYPFMSSAVNP
Sbjct: 197 GHIIFFQSLSLLGYCLFPLDVGAVICMLKDNVILKMVVVSVTLAWSSWAAYPFMSSAVNP 256
Query: 285 RRKALALYPVFLMYVSVGFLIIAID 211
RRKALALYPVFLMYVSVGFLIIAI+
Sbjct: 257 RRKALALYPVFLMYVSVGFLIIAIN 281
>ref|NP_565442.1| Expressed protein; protein id: At2g18840.1, supported by cDNA:
150205. [Arabidopsis thaliana] gi|7485786|pir||T01612
hypothetical protein At2g18840 [imported] - Arabidopsis
thaliana gi|4185150|gb|AAD08953.1| expressed protein
[Arabidopsis thaliana] gi|20197033|gb|AAM14883.1|
expressed protein [Arabidopsis thaliana]
Length = 281
Score = 162 bits (411), Expect = 1e-39
Identities = 80/85 (94%), Positives = 84/85 (98%)
Frame = -1
Query: 465 GHIIFFQSLSLLGYCLFPLDVGALICMLKDHVILKVVVVCVTLAWSSWAAYPFMSSAVNP 286
GHIIFFQSLSLLGYCLFPLDVGA+ICMLKD+VILK+VVV VTLAWSSWAAYPFMSSAVNP
Sbjct: 197 GHIIFFQSLSLLGYCLFPLDVGAVICMLKDNVILKMVVVSVTLAWSSWAAYPFMSSAVNP 256
Query: 285 RRKALALYPVFLMYVSVGFLIIAID 211
RRKALALYPVFLMYVSVGFLIIAI+
Sbjct: 257 RRKALALYPVFLMYVSVGFLIIAIN 281
>pir||T14086 hypothetical protein F9N11.110 - Arabidopsis thaliana
gi|5730136|emb|CAB52470.1| putative protein [Arabidopsis
thaliana] gi|7269926|emb|CAB81019.1| putative protein
[Arabidopsis thaliana]
Length = 355
Score = 161 bits (408), Expect = 3e-39
Identities = 79/85 (92%), Positives = 84/85 (97%)
Frame = -1
Query: 465 GHIIFFQSLSLLGYCLFPLDVGALICMLKDHVILKVVVVCVTLAWSSWAAYPFMSSAVNP 286
GHIIFFQSLSLLGYCLFPLDVGA+ICMLKD+VILK+VVV VTLAWSSWAAYPFMS+AVNP
Sbjct: 271 GHIIFFQSLSLLGYCLFPLDVGAVICMLKDNVILKMVVVSVTLAWSSWAAYPFMSAAVNP 330
Query: 285 RRKALALYPVFLMYVSVGFLIIAID 211
RRKALALYPVFLMYVSVGFLIIAI+
Sbjct: 331 RRKALALYPVFLMYVSVGFLIIAIN 355
>ref|NP_567843.1| hypothetical protein common family; protein id: At4g30260.1,
supported by cDNA: gi_15010747, supported by cDNA:
gi_15810090, supported by cDNA: gi_20260559 [Arabidopsis
thaliana] gi|15010748|gb|AAK74033.1| AT4g30260/F9N11_110
[Arabidopsis thaliana] gi|15810091|gb|AAL06971.1|
AT4g30260/F9N11_110 [Arabidopsis thaliana]
gi|20260560|gb|AAM13178.1| putative protein [Arabidopsis
thaliana]
Length = 280
Score = 161 bits (408), Expect = 3e-39
Identities = 79/85 (92%), Positives = 84/85 (97%)
Frame = -1
Query: 465 GHIIFFQSLSLLGYCLFPLDVGALICMLKDHVILKVVVVCVTLAWSSWAAYPFMSSAVNP 286
GHIIFFQSLSLLGYCLFPLDVGA+ICMLKD+VILK+VVV VTLAWSSWAAYPFMS+AVNP
Sbjct: 196 GHIIFFQSLSLLGYCLFPLDVGAVICMLKDNVILKMVVVSVTLAWSSWAAYPFMSAAVNP 255
Query: 285 RRKALALYPVFLMYVSVGFLIIAID 211
RRKALALYPVFLMYVSVGFLIIAI+
Sbjct: 256 RRKALALYPVFLMYVSVGFLIIAIN 280
>dbj|BAB89791.1| P0677H08.6 [Oryza sativa (japonica cultivar-group)]
Length = 664
Score = 142 bits (359), Expect = 1e-33
Identities = 67/73 (91%), Positives = 72/73 (97%)
Frame = -1
Query: 465 GHIIFFQSLSLLGYCLFPLDVGALICMLKDHVILKVVVVCVTLAWSSWAAYPFMSSAVNP 286
GHIIFFQSLSLLGYCLFPLDVGAL+CMLKD+VILK++VV VTLAWSSWAAYPFMS+AVNP
Sbjct: 188 GHIIFFQSLSLLGYCLFPLDVGALVCMLKDNVILKIIVVTVTLAWSSWAAYPFMSAAVNP 247
Query: 285 RRKALALYPVFLM 247
RRKALALYPVFLM
Sbjct: 248 RRKALALYPVFLM 260
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,106,849
Number of Sequences: 1393205
Number of extensions: 10073723
Number of successful extensions: 33631
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 30428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33383
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
