Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008283A_C01 KMC008283A_c01
(623 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG31649.1| PRLI-interacting factor A [Arabidopsis thaliana] 56 3e-07
ref|NP_197490.1| putative protein; protein id: At5g19900.1 [Arab... 56 3e-07
gb|ZP_00079916.1| hypothetical protein [Geobacter metallireducens] 39 0.072
ref|NP_180484.1| putative proline-rich protein; protein id: At2g... 37 0.27
emb|CAC03679.1| SRM102 [Arabidopsis thaliana] 37 0.27
>gb|AAG31649.1| PRLI-interacting factor A [Arabidopsis thaliana]
Length = 485
Score = 56.2 bits (134), Expect = 3e-07
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 6/63 (9%)
Frame = -2
Query: 622 LSRFEMIYPD----ELN--LENRVSQKGKRIAELIDENFLLSERIYFLEMELDEVRKRVR 461
LSRFEMIYP+ E N LENRV + IA+L +EN L ER++ +E EL ++R+R++
Sbjct: 280 LSRFEMIYPNYGGSEYNNVLENRVDDQDSHIAQLEEENLTLKERLFLMERELGDMRRRLQ 339
Query: 460 RLE 452
LE
Sbjct: 340 YLE 342
>ref|NP_197490.1| putative protein; protein id: At5g19900.1 [Arabidopsis thaliana]
Length = 494
Score = 56.2 bits (134), Expect = 3e-07
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 6/63 (9%)
Frame = -2
Query: 622 LSRFEMIYPD----ELN--LENRVSQKGKRIAELIDENFLLSERIYFLEMELDEVRKRVR 461
LSRFEMIYP+ E N LENRV + IA+L +EN L ER++ +E EL ++R+R++
Sbjct: 289 LSRFEMIYPNYGGSEYNNVLENRVDDQDSHIAQLEEENLTLKERLFLMERELGDMRRRLQ 348
Query: 460 RLE 452
LE
Sbjct: 349 YLE 351
>gb|ZP_00079916.1| hypothetical protein [Geobacter metallireducens]
Length = 284
Score = 38.5 bits (88), Expect = 0.072
Identities = 19/42 (45%), Positives = 29/42 (68%)
Frame = -2
Query: 565 QKGKRIAELIDENFLLSERIYFLEMELDEVRKRVRRLESETD 440
+KG A L++EN LL+ RI LE E DE+ R+R++E+E +
Sbjct: 59 RKGGAPASLVEENRLLAARIEELEREKDEILGRIRQIEAENN 100
>ref|NP_180484.1| putative proline-rich protein; protein id: At2g29210.1 [Arabidopsis
thaliana] gi|25408026|pir||G84693 probable proline-rich
protein [imported] - Arabidopsis thaliana
gi|3980411|gb|AAC95214.1| putative proline-rich protein
[Arabidopsis thaliana]
Length = 891
Score = 36.6 bits (83), Expect = 0.27
Identities = 22/51 (43%), Positives = 25/51 (48%)
Frame = +1
Query: 388 RRSKHVHRRQSPAHCSRHQSPTPIAEHAFSPHPIPFPRNKSSRSARNSHLS 540
RR H RRQSPA R +SP+P A SP P P R +S H S
Sbjct: 306 RRPTHEGRRQSPAPSRRRRSPSPPARRRRSPSP-PARRRRSPSPPARRHRS 355
>emb|CAC03679.1| SRM102 [Arabidopsis thaliana]
Length = 894
Score = 36.6 bits (83), Expect = 0.27
Identities = 22/51 (43%), Positives = 25/51 (48%)
Frame = +1
Query: 388 RRSKHVHRRQSPAHCSRHQSPTPIAEHAFSPHPIPFPRNKSSRSARNSHLS 540
RR H RRQSPA R +SP+P A SP P P R +S H S
Sbjct: 309 RRPTHEGRRQSPAPSRRRRSPSPPARRRRSPSP-PARRRRSPSPPARRHRS 358
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,781,943
Number of Sequences: 1393205
Number of extensions: 10616315
Number of successful extensions: 30143
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 28609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30088
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
