Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008272A_C01 KMC008272A_c01
(436 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_043356.1| regulatory protein E2 [Human papillomavirus typ... 35 0.28
ref|XP_231626.1| similar to hypothetical protein DKFZp761N0624 [... 34 0.36
ref|NP_149695.1| 232R [Invertebrate iridescent virus 6] gi|15042... 34 0.36
gb|AAC51346.1| similar to HB24 encoded by GenBank Accession Numb... 34 0.47
ref|NP_068777.1| H2.0-like homeo box 1; H2.0 (Drosophilia)-like ... 34 0.47
>ref|NP_043356.1| regulatory protein E2 [Human papillomavirus type 22]
gi|1718120|sp|P50768|VE2_HPV22 REGULATORY PROTEIN E2
gi|1020182|gb|AAA79404.1| regulatory protein E2
Length = 436
Score = 34.7 bits (78), Expect = 0.28
Identities = 19/56 (33%), Positives = 26/56 (45%)
Frame = -3
Query: 401 SPPEAGSSSPPSRSTSVTVSTRHDGSSPTVNLEERVRRNRSRRHHEPK*WRSRRAR 234
+P A +S P RS+ VT SSPT+ R +R +R P R R+R
Sbjct: 213 APEPASTSDSPQRSSQVTHRYGRKASSPTITTIRRQKRRERQRQETPTRRRKTRSR 268
>ref|XP_231626.1| similar to hypothetical protein DKFZp761N0624 [Homo sapiens]
[Rattus norvegicus]
Length = 783
Score = 34.3 bits (77), Expect = 0.36
Identities = 23/58 (39%), Positives = 27/58 (45%), Gaps = 9/58 (15%)
Frame = -1
Query: 391 RLDHHHHPLGPHRLRFRPAT---TDHH------PR*TWRRG*GGTGHEDIMNRSSGGP 245
R DHH GP + +R T DHH P TWR TGH + +RS GGP
Sbjct: 515 REDHHRSQGGPPPVTWRTTTGHREDHHRSHGGQPPVTWRTT---TGHREDHHRSQGGP 569
Score = 30.4 bits (67), Expect = 5.2
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Frame = -1
Query: 412 RSPSLHLRLDHHHHPLGPHRLRFRPAT---TDHH------PR*TWRRG*GGTGHEDIMNR 260
R+ + H+ DHH GP + +R T DHH P+ T R TGH + +R
Sbjct: 416 RTTTSHME-DHHRSQGGPPPVTWRTTTGHMEDHHRSQGGPPQVTGRTT---TGHREDHHR 471
Query: 259 SSGGP 245
S GGP
Sbjct: 472 SQGGP 476
>ref|NP_149695.1| 232R [Invertebrate iridescent virus 6]
gi|15042313|gb|AAK82093.1|AF303741_232 232R [Chilo
iridescent virus]
Length = 671
Score = 34.3 bits (77), Expect = 0.36
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = -3
Query: 419 INKKPQSPPEAGSSSPPSRSTSVTVSTR--HDGSSPTVNLEERVRRNRSRRHHEPK*WRS 246
+N+KP P A SSS SRST + ST+ SS + R RR+ SR R
Sbjct: 244 VNQKPVEPIRASSSSRSSRSTRRSSSTKPSRRSSSRSRRSSSRSRRSSSRSRRSSSRSRR 303
Query: 245 RRARGGGAAKPVFQYKVRRYQLLDEVSSL 159
R ++ + + +R + ++ L
Sbjct: 304 SSRRSTSRSRSLSKRSIRNISTVGDLEDL 332
>gb|AAC51346.1| similar to HB24 encoded by GenBank Accession Number M60721;
sequence analysis of HLX1 exon 1 (U14325) identified
several frame-shift errors that affect the translation
for HLX1 deduced in Deguchi, et al.(1991). We used our
corrected exon 1 DNA sequence and appended to it exons
2-4 of Deguchi's sequence (justified by homology
comparisons with the mouse cognate protein and by our
limited sequence analysis of HLX1 exons 2-4 [Homo
sapiens]
Length = 326
Score = 33.9 bits (76), Expect = 0.47
Identities = 13/32 (40%), Positives = 19/32 (58%)
Frame = -3
Query: 413 KKPQSPPEAGSSSPPSRSTSVTVSTRHDGSSP 318
++P PP AG+ PP+ T V + H GS+P
Sbjct: 136 QQPPPPPRAGALQPPASGTRVVPNPHHSGSAP 167
>ref|NP_068777.1| H2.0-like homeo box 1; H2.0 (Drosophilia)-like homeo box-1 [Homo
sapiens] gi|7643911|gb|AAF65541.1| homeobox protein
[Homo sapiens] gi|13938329|gb|AAH07294.1|AAH07294 H2.0
(Drosophila)-like homeo box 1 [Homo sapiens]
gi|21707097|gb|AAH33808.1| H2.0-like homeo box 1
(Drosophila) [Homo sapiens]
Length = 488
Score = 33.9 bits (76), Expect = 0.47
Identities = 13/32 (40%), Positives = 19/32 (58%)
Frame = -3
Query: 413 KKPQSPPEAGSSSPPSRSTSVTVSTRHDGSSP 318
++P PP AG+ PP+ T V + H GS+P
Sbjct: 136 QQPPPPPRAGALQPPASGTRVVPNPHHSGSAP 167
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 412,099,237
Number of Sequences: 1393205
Number of extensions: 9297825
Number of successful extensions: 35976
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 32773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35737
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 6756111528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
