Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008254A_C01 KMC008254A_c01
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564300.1| expressed protein; protein id: At1g28140.1, sup... 148 6e-35
gb|AAG51484.1|AC069471_15 unknown protein [Arabidopsis thaliana] 148 6e-35
gb|AAO20070.1| unknown protein [Oryza sativa (japonica cultivar-... 136 2e-31
ref|NP_485369.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 74 1e-12
gb|ZP_00106221.1| hypothetical protein [Nostoc punctiforme] 71 9e-12
>ref|NP_564300.1| expressed protein; protein id: At1g28140.1, supported by cDNA:
6875., supported by cDNA: gi_15450805, supported by
cDNA: gi_20259877 [Arabidopsis thaliana]
gi|25513505|pir||C86407 F3H9.20 protein - Arabidopsis
thaliana gi|9795620|gb|AAF98438.1|AC021044_17 Unknown
protein [Arabidopsis thaliana]
gi|15450806|gb|AAK96674.1| Unknown protein [Arabidopsis
thaliana] gi|20259878|gb|AAM13286.1| unknown protein
[Arabidopsis thaliana]
Length = 280
Score = 148 bits (373), Expect = 6e-35
Identities = 68/88 (77%), Positives = 81/88 (91%)
Frame = -2
Query: 592 EGLCYGKLEAGVLTFVIPTVLLGHMTGLMDDGAKLTLLASWMALFVIFAGRKFTQPIKDD 413
EGLCYGKLEAG+LTF+IP+VLLGH++GLM+D KL LL +WMALF++FAGRKFTQPIKDD
Sbjct: 191 EGLCYGKLEAGLLTFIIPSVLLGHLSGLMNDEVKLVLLGTWMALFLVFAGRKFTQPIKDD 250
Query: 412 IGDKSVFMFNSLSDDERKTLIEKLEQQK 329
IGDKSVF F SLSDDE+K ++EKLEQ+K
Sbjct: 251 IGDKSVFTFMSLSDDEKKAIVEKLEQEK 278
>gb|AAG51484.1|AC069471_15 unknown protein [Arabidopsis thaliana]
Length = 295
Score = 148 bits (373), Expect = 6e-35
Identities = 68/88 (77%), Positives = 81/88 (91%)
Frame = -2
Query: 592 EGLCYGKLEAGVLTFVIPTVLLGHMTGLMDDGAKLTLLASWMALFVIFAGRKFTQPIKDD 413
EGLCYGKLEAG+LTF+IP+VLLGH++GLM+D KL LL +WMALF++FAGRKFTQPIKDD
Sbjct: 191 EGLCYGKLEAGLLTFIIPSVLLGHLSGLMNDEVKLVLLGTWMALFLVFAGRKFTQPIKDD 250
Query: 412 IGDKSVFMFNSLSDDERKTLIEKLEQQK 329
IGDKSVF F SLSDDE+K ++EKLEQ+K
Sbjct: 251 IGDKSVFTFMSLSDDEKKAIVEKLEQEK 278
>gb|AAO20070.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 286
Score = 136 bits (342), Expect = 2e-31
Identities = 63/87 (72%), Positives = 74/87 (84%)
Frame = -2
Query: 592 EGLCYGKLEAGVLTFVIPTVLLGHMTGLMDDGAKLTLLASWMALFVIFAGRKFTQPIKDD 413
EGLCYGKLEAG+LTFVIP +LLGH++GLMD+G K LL WM LF +FA RKF QPIKDD
Sbjct: 195 EGLCYGKLEAGILTFVIPGLLLGHLSGLMDNGTKAGLLGVWMVLFTVFAARKFQQPIKDD 254
Query: 412 IGDKSVFMFNSLSDDERKTLIEKLEQQ 332
IGDKSVFMFN+L ++E+K LI+KLE Q
Sbjct: 255 IGDKSVFMFNALPEEEKKALIQKLEMQ 281
>ref|NP_485369.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25359470|pir||AC1972
hypothetical protein all1326 [imported] - Nostoc sp.
(strain PCC 7120) gi|17130673|dbj|BAB73283.1|
ORF_ID:all1326~hypothetical protein [Nostoc sp. PCC
7120]
Length = 218
Score = 73.9 bits (180), Expect = 1e-12
Identities = 35/69 (50%), Positives = 47/69 (67%)
Frame = -2
Query: 592 EGLCYGKLEAGVLTFVIPTVLLGHMTGLMDDGAKLTLLASWMALFVIFAGRKFTQPIKDD 413
E C+ +LE VLTF++PT+LLGH+ G++ + LL +W LF+IFA RK Q I D
Sbjct: 141 EAFCFYRLETKVLTFLVPTLLLGHLVGVLPTQWEQILLGTWAILFLIFAVRKVIQAIPPD 200
Query: 412 IGDKSVFMF 386
IGDKSVF +
Sbjct: 201 IGDKSVFAY 209
>gb|ZP_00106221.1| hypothetical protein [Nostoc punctiforme]
Length = 218
Score = 71.2 bits (173), Expect = 9e-12
Identities = 32/69 (46%), Positives = 44/69 (63%)
Frame = -2
Query: 592 EGLCYGKLEAGVLTFVIPTVLLGHMTGLMDDGAKLTLLASWMALFVIFAGRKFTQPIKDD 413
E C+ +LE VLT ++P +LLGH+ G++ + LL W LF++FA RK Q I D
Sbjct: 141 EAFCFNRLETKVLTLIVPLLLLGHLVGILPTQGESVLLGIWATLFLVFALRKTVQAIPAD 200
Query: 412 IGDKSVFMF 386
IGDKSVF +
Sbjct: 201 IGDKSVFTY 209
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,598,718
Number of Sequences: 1393205
Number of extensions: 9419343
Number of successful extensions: 21964
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 21349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21960
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
