Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008252A_C01 KMC008252A_c01
(613 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T04629 hypothetical protein F10N7.30 - Arabidopsis thaliana... 45 7e-04
ref|NP_567888.1| putative protein; protein id: At4g32160.1, supp... 45 7e-04
emb|CAA16974.1| hypothetical protein [Arabidopsis thaliana] 45 7e-04
gb|AAL24093.1| unknown protein [Arabidopsis thaliana] 44 0.001
ref|NP_188213.1| hypothetical protein; protein id: At3g15920.1 [... 39 0.041
>pir||T04629 hypothetical protein F10N7.30 - Arabidopsis thaliana
gi|2827621|emb|CAA16573.1| putative protein [Arabidopsis
thaliana] gi|7270120|emb|CAB79934.1| putative protein
[Arabidopsis thaliana]
Length = 731
Score = 45.1 bits (105), Expect = 7e-04
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Frame = -1
Query: 613 ADDQIDILLAEVENLEK-DCGSAASYVDKSNGIKDGV-ICDDEMRKIIADLFIDNVRLRK 440
+DDQI+ E + L D +AA +DK+ + I +DE+RKI+A++F++N +LRK
Sbjct: 638 SDDQIE----EAQLLSGFDENAAAEDIDKTLSMDTETRIMEDELRKILANIFVENAKLRK 693
Query: 439 QTNRITRHALKLETAASDD 383
Q N AL+ + ++D
Sbjct: 694 QVNSAMLRALQKDVKTTED 712
>ref|NP_567888.1| putative protein; protein id: At4g32160.1, supported by cDNA:
gi_16604600 [Arabidopsis thaliana]
Length = 534
Score = 45.1 bits (105), Expect = 7e-04
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Frame = -1
Query: 613 ADDQIDILLAEVENLEK-DCGSAASYVDKSNGIKDGV-ICDDEMRKIIADLFIDNVRLRK 440
+DDQI+ E + L D +AA +DK+ + I +DE+RKI+A++F++N +LRK
Sbjct: 441 SDDQIE----EAQLLSGFDENAAAEDIDKTLSMDTETRIMEDELRKILANIFVENAKLRK 496
Query: 439 QTNRITRHALKLETAASDD 383
Q N AL+ + ++D
Sbjct: 497 QVNSAMLRALQKDVKTTED 515
>emb|CAA16974.1| hypothetical protein [Arabidopsis thaliana]
Length = 117
Score = 45.1 bits (105), Expect = 7e-04
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Frame = -1
Query: 613 ADDQIDILLAEVENLEK-DCGSAASYVDKSNGIKDGV-ICDDEMRKIIADLFIDNVRLRK 440
+DDQI+ E + L D +AA +DK+ + I +DE+RKI+A++F++N +LRK
Sbjct: 24 SDDQIE----EAQLLSGFDENAAAEDIDKTLSMDTETRIMEDELRKILANIFVENAKLRK 79
Query: 439 QTNRITRHALKLETAASDD 383
Q N AL+ + ++D
Sbjct: 80 QVNSAMLRALQKDVKTTED 98
>gb|AAL24093.1| unknown protein [Arabidopsis thaliana]
Length = 534
Score = 44.3 bits (103), Expect = 0.001
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Frame = -1
Query: 613 ADDQIDILLAEVENLEK-DCGSAASYVDKSNGIKDGV-ICDDEMRKIIADLFIDNVRLRK 440
+DDQI+ E + L D +AA +DK+ + I +DE+RKI+A++F++N +LRK
Sbjct: 441 SDDQIE----EAQLLSGFDEKAAAEDIDKTLSMDTETRIMEDELRKILANIFVENAKLRK 496
Query: 439 QTNRITRHALKLETAASDD 383
Q N AL+ + ++D
Sbjct: 497 QVNSAMLRALQKDVKTTED 515
>ref|NP_188213.1| hypothetical protein; protein id: At3g15920.1 [Arabidopsis
thaliana] gi|9294595|dbj|BAB02876.1|
emb|CAA16573.1~gene_id:MVC8.4~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 755
Score = 39.3 bits (90), Expect = 0.041
Identities = 23/68 (33%), Positives = 41/68 (59%)
Frame = -1
Query: 613 ADDQIDILLAEVENLEKDCGSAASYVDKSNGIKDGVICDDEMRKIIADLFIDNVRLRKQT 434
+D++I +L+AE + L ++ + ++G G DD +RK++ ++ IDN RLRKQ
Sbjct: 660 SDNRIGLLIAETQLLSEE----VEKLKLTSGGHRGT--DDLVRKMLTEVLIDNARLRKQV 713
Query: 433 NRITRHAL 410
N + R +L
Sbjct: 714 NSVLRCSL 721
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,363,990
Number of Sequences: 1393205
Number of extensions: 9837507
Number of successful extensions: 23086
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 22236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23029
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
