Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008236A_C01 KMC008236A_c01
(611 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD40831.1| OSJNBa0086B14.3 [Oryza sativa (japonica cultivar... 131 8e-30
emb|CAC05471.1| putative protein [Arabidopsis thaliana] 127 1e-28
gb|AAM64472.1| unknown [Arabidopsis thaliana] 127 1e-28
ref|NP_568214.1| putative protein; protein id: At5g09450.1, supp... 127 1e-28
ref|NP_198098.1| putative protein; protein id: At5g27460.1 [Arab... 61 1e-08
>emb|CAD40831.1| OSJNBa0086B14.3 [Oryza sativa (japonica cultivar-group)]
Length = 430
Score = 131 bits (329), Expect = 8e-30
Identities = 56/116 (48%), Positives = 85/116 (73%), Gaps = 1/116 (0%)
Frame = -2
Query: 607 NSLAETEKRITQSQWITYDFLIILYAGLGSKDKLDQIWNSLRMTKQKMINRNYSCIISAY 428
NSL E E +I++ +WITYDFL+IL+ GLG++D++ IW S+ MT Q+M +RNY C++S+Y
Sbjct: 304 NSLVEAEAKISRREWITYDFLVILHTGLGNRDRIKDIWKSMLMTSQRMTSRNYICVLSSY 363
Query: 427 LMLGHVKEVGEVIDQWKNSTI-DFDMLACKKIMDAFRATGLADIANNLNMILIEKN 263
LM G +K+ GEVIDQW+ S +FD+ AC ++ DAF G D AN+ ++++K+
Sbjct: 364 LMCGQLKDAGEVIDQWQRSKAPEFDISACNRLFDAFLNAGFTDTANSFRELMLQKS 419
>emb|CAC05471.1| putative protein [Arabidopsis thaliana]
Length = 402
Score = 127 bits (318), Expect = 1e-28
Identities = 60/117 (51%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
Frame = -2
Query: 595 ETEKRITQSQWITYDFLIILYAGLGSKDKLDQIWNSLRMTKQKMINRNYSCIISAYLMLG 416
E EK I+Q +WITYDFL+IL+ GLG+K +DQIW SLR T Q + +R+Y C++S+YLMLG
Sbjct: 282 EAEKSISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLG 341
Query: 415 HVKEVGEVIDQWKNS-TIDFDMLACKKIMDAFRATGLADIANNLNMILIEKNINPGN 248
H++E E+I QWK S T +FD AC +I++AFR GL IA+ ++IL+ + N
Sbjct: 342 HLREAEEIIHQWKESKTTEFDASACLRILNAFRDVGLEGIASGFHLILVHNKCSLEN 398
>gb|AAM64472.1| unknown [Arabidopsis thaliana]
Length = 409
Score = 127 bits (318), Expect = 1e-28
Identities = 60/117 (51%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
Frame = -2
Query: 595 ETEKRITQSQWITYDFLIILYAGLGSKDKLDQIWNSLRMTKQKMINRNYSCIISAYLMLG 416
E EK I+Q +WITYDFL+IL+ GLG+K +DQIW SLR T Q + +R+Y C++S+YLMLG
Sbjct: 289 EAEKSISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLG 348
Query: 415 HVKEVGEVIDQWKNS-TIDFDMLACKKIMDAFRATGLADIANNLNMILIEKNINPGN 248
H++E E+I QWK S T +FD AC +I++AFR GL IA+ ++IL+ + N
Sbjct: 349 HLREAEEIIHQWKESKTTEFDASACLRILNAFRDVGLEGIASGFHLILVHNKCSLEN 405
>ref|NP_568214.1| putative protein; protein id: At5g09450.1, supported by cDNA:
249741., supported by cDNA: gi_14596092 [Arabidopsis
thaliana] gi|14596093|gb|AAK68774.1| putative protein
[Arabidopsis thaliana] gi|27311913|gb|AAO00922.1|
putative protein [Arabidopsis thaliana]
Length = 409
Score = 127 bits (318), Expect = 1e-28
Identities = 60/117 (51%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
Frame = -2
Query: 595 ETEKRITQSQWITYDFLIILYAGLGSKDKLDQIWNSLRMTKQKMINRNYSCIISAYLMLG 416
E EK I+Q +WITYDFL+IL+ GLG+K +DQIW SLR T Q + +R+Y C++S+YLMLG
Sbjct: 289 EAEKSISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLG 348
Query: 415 HVKEVGEVIDQWKNS-TIDFDMLACKKIMDAFRATGLADIANNLNMILIEKNINPGN 248
H++E E+I QWK S T +FD AC +I++AFR GL IA+ ++IL+ + N
Sbjct: 349 HLREAEEIIHQWKESKTTEFDASACLRILNAFRDVGLEGIASGFHLILVHNKCSLEN 405
>ref|NP_198098.1| putative protein; protein id: At5g27460.1 [Arabidopsis thaliana]
Length = 491
Score = 60.8 bits (146), Expect = 1e-08
Identities = 30/116 (25%), Positives = 61/116 (51%)
Frame = -2
Query: 601 LAETEKRITQSQWITYDFLIILYAGLGSKDKLDQIWNSLRMTKQKMINRNYSCIISAYLM 422
L + EK + +S + Y FLI LYA LG+K+ + ++W + ++ NY C++S+ +
Sbjct: 272 LEDAEKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVK 331
Query: 421 LGHVKEVGEVIDQWKNSTIDFDMLACKKIMDAFRATGLADIANNLNMILIEKNINP 254
G ++E V +W+ ++D+ ++ A+ G A +L+ ++E+ P
Sbjct: 332 TGDLEEAERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTP 387
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,628,053
Number of Sequences: 1393205
Number of extensions: 8809579
Number of successful extensions: 19581
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 19110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19570
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
