Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008235A_C01 KMC008235A_c01
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61639.1| unknown [Arabidopsis thaliana] 262 2e-69
ref|NP_191546.1| putative protein; protein id: At3g59870.1, supp... 261 5e-69
ref|NP_181922.1| unknown protein; protein id: At2g43940.1 [Arabi... 219 2e-56
ref|ZP_00074402.1| hypothetical protein [Trichodesmium erythraeu... 170 1e-41
ref|NP_113334.1| hypothetical protein [Guillardia theta] gi|2539... 170 1e-41
>gb|AAM61639.1| unknown [Arabidopsis thaliana]
Length = 288
Score = 262 bits (670), Expect = 2e-69
Identities = 128/141 (90%), Positives = 138/141 (97%)
Frame = -2
Query: 592 IGFFGTRNMGFMHQELIEILSYAMVITKNHIYTSGASGTNAAVIRGALRAEKPDFLTVIL 413
IGFFGTRNMGFMHQELI+ILSYAMVITKNHIYTSGA+GTNAAVIRGALRAE+P+ LTVIL
Sbjct: 148 IGFFGTRNMGFMHQELIQILSYAMVITKNHIYTSGAAGTNAAVIRGALRAERPELLTVIL 207
Query: 412 PQSLSKQPPESQELLSKVKKVIEKPYNDHLPLIEASRLCNMDIISKVQQVICFAFHDSRL 233
PQSL KQPPESQELLSKV+ VIEKP+NDHLPL+EASRLCNMDIIS+VQQ+ICFAFHDS+L
Sbjct: 208 PQSLKKQPPESQELLSKVQNVIEKPHNDHLPLLEASRLCNMDIISQVQQIICFAFHDSKL 267
Query: 232 LMETCQEAKNLRKIVTLFYLD 170
LMETCQEAKNLRKIVTLFYLD
Sbjct: 268 LMETCQEAKNLRKIVTLFYLD 288
>ref|NP_191546.1| putative protein; protein id: At3g59870.1, supported by cDNA:
12735. [Arabidopsis thaliana] gi|11357602|pir||T47811
hypothetical protein F24G16.140 - Arabidopsis thaliana
gi|7019681|emb|CAB75806.1| putative protein [Arabidopsis
thaliana]
Length = 288
Score = 261 bits (667), Expect = 5e-69
Identities = 127/141 (90%), Positives = 138/141 (97%)
Frame = -2
Query: 592 IGFFGTRNMGFMHQELIEILSYAMVITKNHIYTSGASGTNAAVIRGALRAEKPDFLTVIL 413
IGFFGTRNMGFMHQELI+ILSYAMVITKNHIYTSGA+GTNAAVIRGALRAE+P+ LTVIL
Sbjct: 148 IGFFGTRNMGFMHQELIQILSYAMVITKNHIYTSGAAGTNAAVIRGALRAERPELLTVIL 207
Query: 412 PQSLSKQPPESQELLSKVKKVIEKPYNDHLPLIEASRLCNMDIISKVQQVICFAFHDSRL 233
PQSL KQPPESQELLSKV+ VIEKP+NDHLPL+EASRLCNMDIIS+VQQ+ICFAFHDS+L
Sbjct: 208 PQSLKKQPPESQELLSKVQNVIEKPHNDHLPLLEASRLCNMDIISQVQQIICFAFHDSKL 267
Query: 232 LMETCQEAKNLRKIVTLFYLD 170
LMETCQEA+NLRKIVTLFYLD
Sbjct: 268 LMETCQEARNLRKIVTLFYLD 288
>ref|NP_181922.1| unknown protein; protein id: At2g43940.1 [Arabidopsis thaliana]
gi|7486491|pir||T00674 hypothetical protein At2g43940
[imported] - Arabidopsis thaliana
gi|3212851|gb|AAC23402.1| unknown protein [Arabidopsis
thaliana]
Length = 383
Score = 219 bits (559), Expect = 2e-56
Identities = 107/117 (91%), Positives = 114/117 (96%)
Frame = -2
Query: 592 IGFFGTRNMGFMHQELIEILSYAMVITKNHIYTSGASGTNAAVIRGALRAEKPDFLTVIL 413
IGFFGTRNMGFMHQELIEILSYAMVITKNHIYTSGASGTNAAVIRGALRAE+P+ LTVIL
Sbjct: 149 IGFFGTRNMGFMHQELIEILSYAMVITKNHIYTSGASGTNAAVIRGALRAERPELLTVIL 208
Query: 412 PQSLSKQPPESQELLSKVKKVIEKPYNDHLPLIEASRLCNMDIISKVQQVICFAFHD 242
PQSL KQPPESQELLSKV+ V+EKP+NDHLPL+EASRLCNMDIIS+VQQVICFAFHD
Sbjct: 209 PQSLKKQPPESQELLSKVQNVVEKPHNDHLPLLEASRLCNMDIISQVQQVICFAFHD 265
>ref|ZP_00074402.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 138
Score = 170 bits (431), Expect = 1e-41
Identities = 82/137 (59%), Positives = 110/137 (79%)
Frame = -2
Query: 580 GTRNMGFMHQELIEILSYAMVITKNHIYTSGASGTNAAVIRGALRAEKPDFLTVILPQSL 401
G+R++ HQ+LIE+LSYA+V+ NHI TSGA+GTN AV+RGA+RA+ P+ +TVILPQSL
Sbjct: 3 GSRHVPITHQQLIELLSYALVLGSNHIITSGATGTNLAVVRGAMRAD-PNLVTVILPQSL 61
Query: 400 SKQPPESQELLSKVKKVIEKPYNDHLPLIEASRLCNMDIISKVQQVICFAFHDSRLLMET 221
+QP ES++ L KV V+E P N+ L L EAS +CN +I+S+ QQ+ICFAFHDS L++T
Sbjct: 62 ERQPRESRKELEKVIHVVENPKNNQLSLAEASSICNQEIVSRCQQLICFAFHDSHTLLKT 121
Query: 220 CQEAKNLRKIVTLFYLD 170
CQ+A+ RK+VTLFYLD
Sbjct: 122 CQDAEEQRKVVTLFYLD 138
>ref|NP_113334.1| hypothetical protein [Guillardia theta] gi|25396783|pir||C90095
hypothetical protein orf228 [imported] - Guillardia
theta nucleomorph gi|13794516|gb|AAK39891.1|AF165818_99
hypothetical protein [Guillardia theta]
Length = 228
Score = 170 bits (431), Expect = 1e-41
Identities = 81/143 (56%), Positives = 111/143 (76%), Gaps = 2/143 (1%)
Frame = -2
Query: 592 IGFFGTRNMGFMHQELIEILSYAMVITKNHIYTSGA--SGTNAAVIRGALRAEKPDFLTV 419
+ GTR+ ++HQ+++E+L+YA ++ NH++TSG SGTNAAVI+GALRAEKP+ LTV
Sbjct: 86 VAILGTRHFSYLHQQIVELLTYANILVGNHVFTSGGAVSGTNAAVIKGALRAEKPELLTV 145
Query: 418 ILPQSLSKQPPESQELLSKVKKVIEKPYNDHLPLIEASRLCNMDIISKVQQVICFAFHDS 239
+LPQSLS+QPP+ +ELL KV+ V+E ND LPL ASRLCN +I+S+ +I FAFHDS
Sbjct: 146 VLPQSLSRQPPDVRELLEKVRNVVEMRENDDLPLDVASRLCNSNILSRCDHLISFAFHDS 205
Query: 238 RLLMETCQEAKNLRKIVTLFYLD 170
+++E +EAK L K+VTL YLD
Sbjct: 206 VVVLEAAREAKALNKLVTLLYLD 228
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,901,789
Number of Sequences: 1393205
Number of extensions: 9001665
Number of successful extensions: 19046
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19034
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
