Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008209A_C01 KMC008209A_c01
(623 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA94778.1| unnamed protein product [Oryza sativa (japonica ... 42 0.009
ref|NP_795914.1| RIKEN cDNA A230063L24 gene [Mus musculus] gi|26... 37 0.27
emb|CAB45034.1| putative WD-repeat containing protein [Amycolato... 34 1.4
gb|AAG24791.1|AF264028_1 gag protein [Glomerella cingulata] 33 2.3
gb|AAH44174.1| Similar to RIKEN cDNA 9430077D24 gene [Danio rerio] 33 3.0
>dbj|BAA94778.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 489
Score = 41.6 bits (96), Expect = 0.009
Identities = 19/64 (29%), Positives = 33/64 (50%)
Frame = -2
Query: 493 DFIFAGTNFGTLDALWLKDKFNPGSPVHPTLAGGHTHTTSLVSDVDGMMLFVGSSDGKIQ 314
D ++ G+ G ++ +W ++K + GG + D DG ++ VG+SDG+IQ
Sbjct: 426 DLVYLGSRNGVVE-IWSREKLTRIGALQAGGGGGSGRVQCMAVDADGDVIVVGTSDGRIQ 484
Query: 313 VWAL 302
W L
Sbjct: 485 AWGL 488
>ref|NP_795914.1| RIKEN cDNA A230063L24 gene [Mus musculus]
gi|26330260|dbj|BAC28860.1| unnamed protein product [Mus
musculus]
Length = 1228
Score = 36.6 bits (83), Expect = 0.27
Identities = 15/43 (34%), Positives = 25/43 (57%)
Frame = -2
Query: 427 PGSPVHPTLAGGHTHTTSLVSDVDGMMLFVGSSDGKIQVWALD 299
PG P+ TL G H T++ ++ +L VG+ DG + VW ++
Sbjct: 649 PGGPLRATLTGCHKGITAIAWSLEEKLLVVGTQDGAMVVWDVE 691
>emb|CAB45034.1| putative WD-repeat containing protein [Amycolatopsis orientalis]
Length = 1241
Score = 34.3 bits (77), Expect = 1.4
Identities = 23/64 (35%), Positives = 31/64 (47%), Gaps = 7/64 (10%)
Frame = -2
Query: 478 GTNFGTLDA-----LWLKDKFNP-GSPVHPTLAGGHTHT-TSLVSDVDGMMLFVGSSDGK 320
GT T A LW + P G P+ GHT+T TS+ DG +L GS+DG
Sbjct: 680 GTTLATASADRTVRLWDVARHRPIGEPM-----SGHTNTVTSIAFSSDGRLLVTGSADGT 734
Query: 319 IQVW 308
++ W
Sbjct: 735 VRTW 738
>gb|AAG24791.1|AF264028_1 gag protein [Glomerella cingulata]
Length = 837
Score = 33.5 bits (75), Expect = 2.3
Identities = 27/83 (32%), Positives = 33/83 (39%)
Frame = +3
Query: 261 QKGHYTLSCDCA*SKAQTWILPSEEPTKSIIPSTSDTNDVVCV*PPASVGWTGEPGLNLS 440
QKGH L+ +C K Q W P E TK + +T P AS+ WTG N
Sbjct: 370 QKGH--LAYECPAPKKQQW-KPVPERTKQVSMTTKT--------PHASLSWTGCYNDNCP 418
Query: 441 FSQSASRVPKFVPANMKSRVDGY 509
QS + P N GY
Sbjct: 419 THQSDKEASGYYPRNPDQGRSGY 441
>gb|AAH44174.1| Similar to RIKEN cDNA 9430077D24 gene [Danio rerio]
Length = 313
Score = 33.1 bits (74), Expect = 3.0
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = -2
Query: 562 FPKKCWWDHSPLGLTFIA*PSTRDFIFAGTNFGTLDALWLKDKFNPGSPVHPTLAGGHTH 383
+ + C W GL F + I TN GTL L D F G+ +H GG+ +
Sbjct: 191 YERTCEWT----GLKF---SNDGKLILVSTNGGTLRVL---DAFK-GAVLHSF--GGYNN 237
Query: 382 TTSLVSDV----DGMMLFVGSSDGKIQVW 308
+ ++ + D + +GS DGKI VW
Sbjct: 238 SKGVILEAPFTPDSQFIMIGSEDGKIHVW 266
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 560,353,718
Number of Sequences: 1393205
Number of extensions: 12700440
Number of successful extensions: 28498
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 26734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28491
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
