Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008161A_C01 KMC008161A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566111.1| expressed protein; protein id: At2g47790.1, sup... 36 0.31
pir||E84919 hypothetical protein At2g47790 [imported] - Arabidop... 36 0.31
ref|NP_443343.1| NADH dehydrogenase subunit 5 [Percopsis transmo... 33 2.6
gb|AAK08588.1| NADH dehydrogenase subunit 5 [Eudromia elegans] 33 3.4
ref|NP_115283.1| NADH dehydrogenase subunit 5 [Eudromia elegans]... 33 3.4
>ref|NP_566111.1| expressed protein; protein id: At2g47790.1, supported by cDNA:
gi_15983389 [Arabidopsis thaliana]
gi|15983390|gb|AAL11563.1|AF424569_1 At2g47790/F17A22.18
[Arabidopsis thaliana] gi|20197308|gb|AAC63654.2|
expressed protein [Arabidopsis thaliana]
gi|23308341|gb|AAN18140.1| At2g47790/F17A22.18
[Arabidopsis thaliana]
Length = 392
Score = 36.2 bits (82), Expect = 0.31
Identities = 13/21 (61%), Positives = 16/21 (75%)
Frame = -2
Query: 310 RYGLFGESYQKLWCLTHTETL 248
+ G G+ Y+KLWCLTH ETL
Sbjct: 225 KIGFLGDGYKKLWCLTHIETL 245
>pir||E84919 hypothetical protein At2g47790 [imported] - Arabidopsis thaliana
Length = 425
Score = 36.2 bits (82), Expect = 0.31
Identities = 13/21 (61%), Positives = 16/21 (75%)
Frame = -2
Query: 310 RYGLFGESYQKLWCLTHTETL 248
+ G G+ Y+KLWCLTH ETL
Sbjct: 258 KIGFLGDGYKKLWCLTHIETL 278
>ref|NP_443343.1| NADH dehydrogenase subunit 5 [Percopsis transmontana]
gi|16266999|dbj|BAB70154.1| NADH dehydrogenase subunit 5
[Percopsis transmontana]
Length = 612
Score = 33.1 bits (74), Expect = 2.6
Identities = 19/49 (38%), Positives = 28/49 (56%), Gaps = 3/49 (6%)
Frame = -1
Query: 170 LESLTSSWNW---NEFSYESGFKLSWFKTLIHLPIPVFVNCNIS*FVTF 33
LE++ +SW+W N F FK + TLI LPI ++V +I F T+
Sbjct: 64 LEAVVTSWSWINTNTFDINLSFKFDNY-TLIFLPIALYVTWSILEFATW 111
>gb|AAK08588.1| NADH dehydrogenase subunit 5 [Eudromia elegans]
Length = 606
Score = 32.7 bits (73), Expect = 3.4
Identities = 17/49 (34%), Positives = 29/49 (58%), Gaps = 3/49 (6%)
Frame = -1
Query: 170 LESLTSSWNWN---EFSYESGFKLSWFKTLIHLPIPVFVNCNIS*FVTF 33
++++T+SW WN F FKL + +++ LPI +FV +I F T+
Sbjct: 61 MDTITTSWYWNFTPNFKIPLNFKLDQY-SILFLPIALFVTWSILQFATW 108
>ref|NP_115283.1| NADH dehydrogenase subunit 5 [Eudromia elegans]
gi|25285171|pir||C90627 NADH dehydrogenase chain 5 ND5
[imported] - Eudromia elegans mitochondrion
gi|14039539|gb|AAK53281.1|AF338710_1 NADH dehydrogenase
subunit V [Eudromia elegans]
Length = 606
Score = 32.7 bits (73), Expect = 3.4
Identities = 17/49 (34%), Positives = 29/49 (58%), Gaps = 3/49 (6%)
Frame = -1
Query: 170 LESLTSSWNWN---EFSYESGFKLSWFKTLIHLPIPVFVNCNIS*FVTF 33
++++T+SW WN F FKL + +++ LPI +FV +I F T+
Sbjct: 61 MDTITTSWYWNFTPNFKIPLNFKLDQY-SILFLPIALFVTWSILQFATW 108
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,559,839
Number of Sequences: 1393205
Number of extensions: 10275184
Number of successful extensions: 21910
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 21346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21880
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
