Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008126A_C01 KMC008126A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_061617.1| similar to olfactory receptor MOR8-1 [Mus muscu... 32 4.4
ref|NP_248160.1| formylmethanofuran dehydrogenase, subunit F (tu... 32 7.5
ref|NP_698022.1| NH(3)-dependent NAD+ synthetase [Brucella suis ... 31 9.7
sp|P27013|SC1_OCTVU S-CRYSTALLIN 1 gi|2117757|pir||S56758 S-crys... 31 9.7
ref|NP_539886.1| GLUTAMINE-DEPENDENT NAD(+) SYNTHETASE [Brucella... 31 9.7
>ref|XP_061617.1| similar to olfactory receptor MOR8-1 [Mus musculus] [Homo sapiens]
gi|21928862|dbj|BAC06017.1| seven transmembrane helix
receptor [Homo sapiens]
Length = 313
Score = 32.3 bits (72), Expect = 4.4
Identities = 23/77 (29%), Positives = 38/77 (48%), Gaps = 4/77 (5%)
Frame = +2
Query: 20 YCSQNYVKCISLLHDYVNKEHNNPTLMNILFGTLGFLCPALG---IAASGPMSLDSILPI 190
YC +N + LH V K + +++++G G LC + IA S + L ++L I
Sbjct: 170 YCKKNQLSHSYCLHQDVMKLACSDNRIDVIYGFFGALCLMVDFILIAVSYTLILKTVLGI 229
Query: 191 SS-CNSCSEINSCVSSI 238
+S +N+CVS I
Sbjct: 230 ASKKEQLKALNTCVSHI 246
>ref|NP_248160.1| formylmethanofuran dehydrogenase, subunit F (tungsten) (fwdF)
[Methanococcus jannaschii] gi|2127922|pir||E64445
polyferredoxin 4x2[4Fe-4S] fwdF - Methanococcus
jannaschii gi|1591792|gb|AAB99168.1| formylmethanofuran
dehydrogenase, subunit F (tungsten) (fwdF)
[Methanococcus jannaschii]
Length = 355
Score = 31.6 bits (70), Expect = 7.5
Identities = 13/40 (32%), Positives = 22/40 (54%)
Frame = +2
Query: 113 GTLGFLCPALGIAASGPMSLDSILPISSCNSCSEINSCVS 232
G F+CPA I P + I+ +++CN+C +C+S
Sbjct: 248 GWCAFICPAEAIEVEKPFKGELIIDVNACNAC---GACIS 284
>ref|NP_698022.1| NH(3)-dependent NAD+ synthetase [Brucella suis 1330]
gi|23347836|gb|AAN29937.1|AE014403_1 NH(3)-dependent
NAD+ synthetase [Brucella suis 1330]
Length = 550
Score = 31.2 bits (69), Expect = 9.7
Identities = 15/43 (34%), Positives = 22/43 (50%)
Frame = +2
Query: 32 NYVKCISLLHDYVNKEHNNPTLMNILFGTLGFLCPALGIAASG 160
+Y C+ L DYVNK ++ + G +C ALG+ A G
Sbjct: 266 DYAACMLGLRDYVNKNGFKDVVLGLSGGIDSAICAALGVDALG 308
>sp|P27013|SC1_OCTVU S-CRYSTALLIN 1 gi|2117757|pir||S56758 S-crystallin isoform S1 -
common octopus gi|9773|emb|CAA46511.1| glutathione
S-transferase [Octopus vulgaris]
Length = 214
Score = 31.2 bits (69), Expect = 9.7
Identities = 20/73 (27%), Positives = 33/73 (44%)
Frame = -2
Query: 312 MHFYIHYLILISSVCCSQF*LCIT*IEETQLLISEHELQDEIGSIESSDIGPEAAIPKAG 133
+H++ H S+VCCSQ + T + + +HE QD + +++G G
Sbjct: 6 LHYFNHRGRARSAVCCSQLLVSSTMTADRVFRMGQHEKQDAMS--HDANVG-------IG 56
Query: 132 QRNPKVPNRIFIR 94
Q+NP P R
Sbjct: 57 QQNPNSPEYAMAR 69
>ref|NP_539886.1| GLUTAMINE-DEPENDENT NAD(+) SYNTHETASE [Brucella melitensis]
gi|25330093|pir||AC3373 NAD synthase
(glutamine-hydrolysing) (EC 6.3.5.1) [imported] -
Brucella melitensis (strain 16M)
gi|17982927|gb|AAL52150.1| GLUTAMINE-DEPENDENT NAD(+)
SYNTHETASE [Brucella melitensis 16M]
Length = 559
Score = 31.2 bits (69), Expect = 9.7
Identities = 15/43 (34%), Positives = 22/43 (50%)
Frame = +2
Query: 32 NYVKCISLLHDYVNKEHNNPTLMNILFGTLGFLCPALGIAASG 160
+Y C+ L DYVNK ++ + G +C ALG+ A G
Sbjct: 275 DYAACMLGLRDYVNKNGFKDVVLGLSGGIDSAICAALGVDALG 317
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,818,036
Number of Sequences: 1393205
Number of extensions: 8929308
Number of successful extensions: 19856
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19848
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
