Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008123A_C01 KMC008123A_c01
(437 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_588445.1| putative ATP-dependent DNA helicase [Schizosacc... 33 1.1
pir||T44954 flagella-related protein I homolog [imported] - Meth... 32 2.3
ref|NP_502722.1| Putative protein, nematode specific [Caenorhabd... 31 3.1
ref|NP_520613.1| HYPOTHETICAL TRANSMEMBRANE PROTEIN [Ralstonia s... 31 3.1
ref|XP_217884.1| similar to RIKEN cDNA 4932702K14 [Mus musculus]... 31 3.1
>ref|NP_588445.1| putative ATP-dependent DNA helicase [Schizosaccharomyces pombe]
gi|7492415|pir||T40906 probable ATP-dependent DNA
helicase - fission yeast (Schizosaccharomyces pombe)
gi|4008550|emb|CAA22471.1| putative ATP-dependent DNA
helicase [Schizosaccharomyces pombe]
Length = 607
Score = 32.7 bits (73), Expect = 1.1
Identities = 26/80 (32%), Positives = 41/80 (50%), Gaps = 2/80 (2%)
Frame = +3
Query: 150 FNPSSLG-STICWYEPSQKKRVPGRVWLSFQSSVGVLVGGNHTSS-RFCTR*ILLPFPPP 323
F PSSL + IC Y+ + + RV + +GVL+ G +S+ RF + +LL PP
Sbjct: 37 FTPSSLQMALICAYQLAAQ-----RVITNPSDIMGVLLYGTESSTGRFANQMMLLDIDPP 91
Query: 324 DFQFQQSSNKFSTQTSFNKK 383
D + +S F F+K+
Sbjct: 92 DAERIKSLQSFEKDFQFSKE 111
>pir||T44954 flagella-related protein I homolog [imported] - Methanococcus
voltae gi|2104781|gb|AAB57833.1| putative
flagella-related protein I [Methanococcus voltae]
Length = 552
Score = 31.6 bits (70), Expect = 2.3
Identities = 23/89 (25%), Positives = 38/89 (41%), Gaps = 2/89 (2%)
Frame = +3
Query: 126 GNFFTMRVFN--PSSLGSTICWYEPSQKKRVPGRVWLSFQSSVGVLVGGNHTSSRFCTR* 299
G FT+R F+ P+S+ I W + + +WL + + + V G S + T
Sbjct: 260 GPSFTIRKFSDTPTSITQIISW--GTMSPEIAAYLWLCLEYGMSIFVCGETASGKTTTLN 317
Query: 300 ILLPFPPPDFQFQQSSNKFSTQTSFNKKP 386
++PF P S FS + + KP
Sbjct: 318 AIMPFIKP------KSKVFSCEDTAEVKP 340
>ref|NP_502722.1| Putative protein, nematode specific [Caenorhabditis elegans]
gi|7505078|pir||T23192 hypothetical protein K01G12.2 -
Caenorhabditis elegans gi|3878167|emb|CAB05236.1|
Hypothetical protein K01G12.2 [Caenorhabditis elegans]
Length = 201
Score = 31.2 bits (69), Expect = 3.1
Identities = 17/39 (43%), Positives = 22/39 (55%)
Frame = +2
Query: 2 GPPRASSTVSLHPSSSSPPNSNSDPKSSQFMRN*TQNAS 118
G P +S S H SSS P+S+S P SS+ + T AS
Sbjct: 7 GKPLSSKGNSAHSSSSMSPSSSSSPSSSKIIGTQTVGAS 45
>ref|NP_520613.1| HYPOTHETICAL TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
gi|17429513|emb|CAD16199.1| HYPOTHETICAL TRANSMEMBRANE
PROTEIN [Ralstonia solanacearum]
Length = 502
Score = 31.2 bits (69), Expect = 3.1
Identities = 19/72 (26%), Positives = 36/72 (49%), Gaps = 5/72 (6%)
Frame = +2
Query: 233 LPIISGCPRGWKSHIIQVLHSLNSSPFSPSGLSISTIFK----QVLNSNLFQQKTLIPQV 400
+PI G P G + ++ V+ SLN++ + P G+ ++ Q +N + T++
Sbjct: 363 VPISGGTPLGGNAALLSVMSSLNATAYYPPGVQVALHGHVHDFQAINFSSNHPATIVAGN 422
Query: 401 HGDE-NPEIPDP 433
GD + +PDP
Sbjct: 423 AGDSLDVALPDP 434
>ref|XP_217884.1| similar to RIKEN cDNA 4932702K14 [Mus musculus] [Rattus norvegicus]
Length = 643
Score = 31.2 bits (69), Expect = 3.1
Identities = 15/38 (39%), Positives = 24/38 (62%)
Frame = +2
Query: 8 PRASSTVSLHPSSSSPPNSNSDPKSSQFMRN*TQNAST 121
P + + ++HPS++ P S S P SSQ +R+ T + ST
Sbjct: 457 PFQNMSSAIHPSNTMPSFSTSGPTSSQAVRHRTASTST 494
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 411,369,944
Number of Sequences: 1393205
Number of extensions: 9223128
Number of successful extensions: 25958
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25918
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 6722674608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
