Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008122A_C01 KMC008122A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB16876.1| P0001B06.29 [Oryza sativa (japonica cultivar-gro... 119 3e-26
pir||T48549 hypothetical protein F14F18.70 - Arabidopsis thalian... 118 6e-26
ref|NP_196751.2| putative protein; protein id: At5g11900.1, supp... 118 6e-26
pir||T50946 hypothetical protein B24P7.10 [imported] - Neurospor... 66 3e-10
ref|NP_596803.1| hypothetical protein [Schizosaccharomyces pombe... 64 1e-09
>dbj|BAB16876.1| P0001B06.29 [Oryza sativa (japonica cultivar-group)]
gi|14646779|dbj|BAB61942.1| P0498B01.15 [Oryza sativa
(japonica cultivar-group)]
Length = 276
Score = 119 bits (297), Expect = 3e-26
Identities = 57/61 (93%), Positives = 60/61 (97%)
Frame = -2
Query: 565 ITTVKGLELFGLKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISFDIVEFITDTWP 386
+T VKGLELFG+KLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIS+DIVEFITDTWP
Sbjct: 204 VTVVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWP 263
Query: 385 D 383
D
Sbjct: 264 D 264
>pir||T48549 hypothetical protein F14F18.70 - Arabidopsis thaliana
gi|7573357|emb|CAB87663.1| putative protein [Arabidopsis
thaliana]
Length = 228
Score = 118 bits (295), Expect = 6e-26
Identities = 59/68 (86%), Positives = 61/68 (88%)
Frame = -2
Query: 565 ITTVKGLELFGLKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISFDIVEFITDTWP 386
IT VKGLELFG+KLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI +DIVEFITDTWP
Sbjct: 150 ITIVKGLELFGIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIIYDIVEFITDTWP 209
Query: 385 DASRVSHF 362
D S F
Sbjct: 210 DVPERSIF 217
>ref|NP_196751.2| putative protein; protein id: At5g11900.1, supported by cDNA:
gi_17381203 [Arabidopsis thaliana]
gi|17381204|gb|AAL36414.1| unknown protein [Arabidopsis
thaliana]
Length = 198
Score = 118 bits (295), Expect = 6e-26
Identities = 59/68 (86%), Positives = 61/68 (88%)
Frame = -2
Query: 565 ITTVKGLELFGLKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISFDIVEFITDTWP 386
IT VKGLELFG+KLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI +DIVEFITDTWP
Sbjct: 120 ITIVKGLELFGIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIIYDIVEFITDTWP 179
Query: 385 DASRVSHF 362
D S F
Sbjct: 180 DVPERSIF 187
>pir||T50946 hypothetical protein B24P7.10 [imported] - Neurospora crassa
gi|9367249|emb|CAB97266.1| conserved hypothetical
protein [Neurospora crassa] gi|28927178|gb|EAA36134.1|
hypothetical protein ( hypothetical protein B24P7.10
[imported] - Neurospora crassa )
Length = 187
Score = 65.9 bits (159), Expect = 3e-10
Identities = 32/61 (52%), Positives = 44/61 (71%)
Frame = -2
Query: 565 ITTVKGLELFGLKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISFDIVEFITDTWP 386
+T+V GLE FGL+L +K GKKFATG+SV K P+ E+I VQGD+S +I EFI + +
Sbjct: 107 VTSVSGLEAFGLELKKVAKDFGKKFATGSSVTKVPSGGEEIVVQGDVSGEIEEFILEKYK 166
Query: 385 D 383
+
Sbjct: 167 E 167
>ref|NP_596803.1| hypothetical protein [Schizosaccharomyces pombe]
gi|13626252|sp|O42929|DENR_SCHPO Density-regulated
protein homolog gi|7491400|pir||T39556 hypothetical
protein SPBC16C6.05 - fission yeast
(Schizosaccharomyces pombe) gi|2853097|emb|CAA16913.1|
hypothetical protein [Schizosaccharomyces pombe]
Length = 190
Score = 64.3 bits (155), Expect = 1e-09
Identities = 29/61 (47%), Positives = 45/61 (73%)
Frame = -2
Query: 565 ITTVKGLELFGLKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISFDIVEFITDTWP 386
+TTV+GL+ FG++ A+K L KFATGASV K +K++I VQGD+++DI +FI + +
Sbjct: 112 VTTVQGLDAFGIETKKAAKMLANKFATGASVTKTADKKDEIVVQGDLNYDIFDFILEKFK 171
Query: 385 D 383
+
Sbjct: 172 E 172
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,945,400
Number of Sequences: 1393205
Number of extensions: 10361397
Number of successful extensions: 22856
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 22376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22841
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
