Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008112A_C01 KMC008112A_c01
(799 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179778.1| putative ATP synthase; protein id: At2g21870.1,... 133 2e-57
gb|AAM64665.1| putative ATP synthase [Arabidopsis thaliana] 133 2e-57
pir||S35942 probable ATP synthase chain - soybean gi|396230|emb|... 130 2e-38
pir||S48643 ATP synthase - soybean 130 2e-38
gb|AAF21215.1|U29763_1 moesin [Xenopus laevis] 42 0.010
>ref|NP_179778.1| putative ATP synthase; protein id: At2g21870.1, supported by cDNA:
31766., supported by cDNA: gi_15028140, supported by
cDNA: gi_19310624 [Arabidopsis thaliana]
gi|25089793|sp|Q9SJ12|ATP7_ARATH Probable ATP synthase
24 kDa subunit, mitochondrial precursor
gi|25355162|pir||B84606 probable ATP synthase [imported]
- Arabidopsis thaliana gi|4417280|gb|AAD20405.1|
putative ATP synthase [Arabidopsis thaliana]
gi|15028141|gb|AAK76694.1| putative ATP synthase
[Arabidopsis thaliana] gi|19310625|gb|AAL85043.1|
putative ATP synthase [Arabidopsis thaliana]
Length = 240
Score = 133 bits (334), Expect(2) = 2e-57
Identities = 68/93 (73%), Positives = 80/93 (85%)
Frame = -2
Query: 573 KWRRSKSKPLLRNDKKGMDLLLAEFDKINKQLGIRKEDLPKYEEQLELKLAKAQLEELKK 394
K + KPLLR+DKKGMDLL+AEF+K NK+LGIRKEDLPKYEE LEL +AKAQL+ELK
Sbjct: 149 KVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKLGIRKEDLPKYEENLELSMAKAQLDELKS 208
Query: 393 DVVEAMETQKKREEFKDEREAVDVKTLDIRNFL 295
D VEAME+QKK+EEF+DE E DVK+LDIRNF+
Sbjct: 209 DAVEAMESQKKKEEFQDE-EMPDVKSLDIRNFI 240
Score = 112 bits (280), Expect(2) = 2e-57
Identities = 56/83 (67%), Positives = 70/83 (83%)
Frame = -1
Query: 799 PEDPAAVSHYANVMKTVREKANL*SESQDILATIETETQDIPDARTYLLTLKDIRTKKGL 620
PEDPAAV YANVMKT+R+KA++ SESQ I I+TETQDIPDAR YLL L++IRT++GL
Sbjct: 74 PEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAYLLKLQEIRTRRGL 133
Query: 619 IDDLGAEAMMIDA*DKVEKE*KQ 551
D+LGAEAMM +A +KVEK+ K+
Sbjct: 134 TDELGAEAMMFEALEKVEKDIKK 156
>gb|AAM64665.1| putative ATP synthase [Arabidopsis thaliana]
Length = 240
Score = 133 bits (334), Expect(2) = 2e-57
Identities = 68/93 (73%), Positives = 80/93 (85%)
Frame = -2
Query: 573 KWRRSKSKPLLRNDKKGMDLLLAEFDKINKQLGIRKEDLPKYEEQLELKLAKAQLEELKK 394
K + KPLLR+DKKGMDLL+AEF+K NK+LGIRKEDLPKYEE LEL +AKAQL+ELK
Sbjct: 149 KVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKLGIRKEDLPKYEENLELSMAKAQLDELKS 208
Query: 393 DVVEAMETQKKREEFKDEREAVDVKTLDIRNFL 295
D VEAME+QKK+EEF+DE E DVK+LDIRNF+
Sbjct: 209 DAVEAMESQKKKEEFQDE-EMPDVKSLDIRNFI 240
Score = 112 bits (280), Expect(2) = 2e-57
Identities = 56/83 (67%), Positives = 70/83 (83%)
Frame = -1
Query: 799 PEDPAAVSHYANVMKTVREKANL*SESQDILATIETETQDIPDARTYLLTLKDIRTKKGL 620
PEDPAAV YANVMKT+R+KA++ SESQ I I+TETQDIPDAR YLL L++IRT++GL
Sbjct: 74 PEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAYLLKLQEIRTRRGL 133
Query: 619 IDDLGAEAMMIDA*DKVEKE*KQ 551
D+LGAEAMM +A +KVEK+ K+
Sbjct: 134 TDELGAEAMMFEALEKVEKDIKK 156
>pir||S35942 probable ATP synthase chain - soybean gi|396230|emb|CAA52349.1|
putative ATP synthase subunit [Glycine max]
Length = 179
Score = 130 bits (328), Expect(2) = 2e-38
Identities = 66/83 (79%), Positives = 74/83 (88%)
Frame = -1
Query: 799 PEDPAAVSHYANVMKTVREKANL*SESQDILATIETETQDIPDARTYLLTLKDIRTKKGL 620
PEDPA VSHYA VMKT+REKA+L ESQDIL+TIE ETQDIPDARTYLLTLK+IR K+GL
Sbjct: 74 PEDPAVVSHYAKVMKTIREKASLLPESQDILSTIEIETQDIPDARTYLLTLKEIRVKRGL 133
Query: 619 IDDLGAEAMMIDA*DKVEKE*KQ 551
DDLGAEA+MIDA DKVEK+ K+
Sbjct: 134 TDDLGAEALMIDALDKVEKDLKK 156
Score = 50.8 bits (120), Expect(2) = 2e-38
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = -2
Query: 573 KWRRSKSKPLLRNDKKGMDLLLAEFDKINKQ 481
K + KPLLRNDKKGMDLLLAEFDKINK+
Sbjct: 149 KVEKDLKKPLLRNDKKGMDLLLAEFDKINKK 179
>pir||S48643 ATP synthase - soybean
Length = 179
Score = 130 bits (328), Expect(2) = 2e-38
Identities = 66/83 (79%), Positives = 74/83 (88%)
Frame = -1
Query: 799 PEDPAAVSHYANVMKTVREKANL*SESQDILATIETETQDIPDARTYLLTLKDIRTKKGL 620
PEDPA VSHYA VMKT+REKA+L ESQDIL+TIE ETQDIPDARTYLLTLK+IR K+GL
Sbjct: 74 PEDPAVVSHYAKVMKTIREKASLLPESQDILSTIEIETQDIPDARTYLLTLKEIRVKRGL 133
Query: 619 IDDLGAEAMMIDA*DKVEKE*KQ 551
DDLGAEA+MIDA DKVEK+ K+
Sbjct: 134 TDDLGAEALMIDALDKVEKDLKK 156
Score = 50.8 bits (120), Expect(2) = 2e-38
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = -2
Query: 573 KWRRSKSKPLLRNDKKGMDLLLAEFDKINKQ 481
K + KPLLRNDKKGMDLLLAEFDKINK+
Sbjct: 149 KVEKDLKKPLLRNDKKGMDLLLAEFDKINKK 179
>gb|AAF21215.1|U29763_1 moesin [Xenopus laevis]
Length = 580
Score = 42.0 bits (97), Expect = 0.010
Identities = 30/93 (32%), Positives = 50/93 (53%)
Frame = -2
Query: 612 ILVQRL**SMHRTKWRRSKSKPLLRNDKKGMDLLLAEFDKINKQLGIRKEDLPKYEEQLE 433
I VQ++ K ++ + LL N+KK +L E +KI ++ KE+L + Q+E
Sbjct: 300 IEVQQMKAQAREEKHQKQMERALLENEKKKRELAEKEKEKIERE----KEELMERLRQIE 355
Query: 432 LKLAKAQLEELKKDVVEAMETQKKREEFKDERE 334
+ KAQ E L+ +A+E +++R KDE E
Sbjct: 356 DQTRKAQ-EALEDQTRKALELEEERRRAKDEAE 387
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 644,586,199
Number of Sequences: 1393205
Number of extensions: 13907580
Number of successful extensions: 54812
Number of sequences better than 10.0: 189
Number of HSP's better than 10.0 without gapping: 44976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51806
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40336047648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
