Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008076A_C01 KMC008076A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB87983.1| Pex10p [Arabidopsis thaliana] 119 4e-26
ref|NP_565621.1| putative peroxisome assembly protein PER8; prot... 119 4e-26
pir||T00968 probable peroxisome assembly protein PER8 - Arabidop... 119 4e-26
gb|AAM64667.1| putative peroxisome assembly protein PER8 [Arabid... 117 1e-25
ref|XP_233729.1| similar to Peroxisome assembly protein 10 (Pero... 70 3e-12
>emb|CAB87983.1| Pex10p [Arabidopsis thaliana]
Length = 381
Score = 119 bits (297), Expect = 4e-26
Identities = 56/105 (53%), Positives = 68/105 (64%)
Frame = -3
Query: 589 SVTLTSYATHHTSAGHGLPVLNEEGTLASPDTDKGSWISESSSSEYHATTGVSKCTLCLS 410
S+ S ++ TS G GLPVLNEEG L + + +KG+W + S+S T V KCTLCLS
Sbjct: 277 SIQQASIGSYQTSGGRGLPVLNEEGNLITSEAEKGNWSTSDSTS----TEAVGKCTLCLS 332
Query: 409 NRPHPTATSCGHVFCWNCITEWCNEKSRVPSLPYPYNTLKSSLCV 275
R HPTAT CGHVFCW+CI EWCNEK P P NT S +C+
Sbjct: 333 TRQHPTATPCGHVFCWSCIMEWCNEKQECPLCRTP-NTHSSLVCL 376
Score = 51.2 bits (121), Expect = 1e-05
Identities = 22/41 (53%), Positives = 25/41 (60%)
Frame = -1
Query: 384 PVAMYFAGTVSQNGATKSPECPLCRTPITHSSLVCVYHSDF 262
P F + + ECPLCRTP THSSLVC+YHSDF
Sbjct: 341 PCGHVFCWSCIMEWCNEKQECPLCRTPNTHSSLVCLYHSDF 381
>ref|NP_565621.1| putative peroxisome assembly protein PER8; protein id: At2g26350.1,
supported by cDNA: 31774., supported by cDNA: gi_4337010
[Arabidopsis thaliana] gi|4337011|gb|AAD18035.1|
zinc-binding peroxisomal integral membrane protein
[Arabidopsis thaliana] gi|20196940|gb|AAC14514.2|
putative peroxisome assembly protein PER8 [Arabidopsis
thaliana] gi|26450822|dbj|BAC42519.1| putative
zinc-binding peroxisomal integral membrane protein PEX10
[Arabidopsis thaliana] gi|28950961|gb|AAO63404.1|
At2g26350 [Arabidopsis thaliana]
Length = 381
Score = 119 bits (297), Expect = 4e-26
Identities = 56/105 (53%), Positives = 68/105 (64%)
Frame = -3
Query: 589 SVTLTSYATHHTSAGHGLPVLNEEGTLASPDTDKGSWISESSSSEYHATTGVSKCTLCLS 410
S+ S ++ TS G GLPVLNEEG L + + +KG+W + S+S T V KCTLCLS
Sbjct: 277 SIQQASIGSYQTSGGRGLPVLNEEGNLITSEAEKGNWSTSDSTS----TEAVGKCTLCLS 332
Query: 409 NRPHPTATSCGHVFCWNCITEWCNEKSRVPSLPYPYNTLKSSLCV 275
R HPTAT CGHVFCW+CI EWCNEK P P NT S +C+
Sbjct: 333 TRQHPTATPCGHVFCWSCIMEWCNEKQECPLCRTP-NTHSSLVCL 376
Score = 51.2 bits (121), Expect = 1e-05
Identities = 22/41 (53%), Positives = 25/41 (60%)
Frame = -1
Query: 384 PVAMYFAGTVSQNGATKSPECPLCRTPITHSSLVCVYHSDF 262
P F + + ECPLCRTP THSSLVC+YHSDF
Sbjct: 341 PCGHVFCWSCIMEWCNEKQECPLCRTPNTHSSLVCLYHSDF 381
>pir||T00968 probable peroxisome assembly protein PER8 - Arabidopsis thaliana
gi|20197181|gb|AAM14959.1| putative peroxisome assembly
protein PER8 [Arabidopsis thaliana]
Length = 310
Score = 119 bits (297), Expect = 4e-26
Identities = 56/105 (53%), Positives = 68/105 (64%)
Frame = -3
Query: 589 SVTLTSYATHHTSAGHGLPVLNEEGTLASPDTDKGSWISESSSSEYHATTGVSKCTLCLS 410
S+ S ++ TS G GLPVLNEEG L + + +KG+W + S+S T V KCTLCLS
Sbjct: 206 SIQQASIGSYQTSGGRGLPVLNEEGNLITSEAEKGNWSTSDSTS----TEAVGKCTLCLS 261
Query: 409 NRPHPTATSCGHVFCWNCITEWCNEKSRVPSLPYPYNTLKSSLCV 275
R HPTAT CGHVFCW+CI EWCNEK P P NT S +C+
Sbjct: 262 TRQHPTATPCGHVFCWSCIMEWCNEKQECPLCRTP-NTHSSLVCL 305
Score = 51.2 bits (121), Expect = 1e-05
Identities = 22/41 (53%), Positives = 25/41 (60%)
Frame = -1
Query: 384 PVAMYFAGTVSQNGATKSPECPLCRTPITHSSLVCVYHSDF 262
P F + + ECPLCRTP THSSLVC+YHSDF
Sbjct: 270 PCGHVFCWSCIMEWCNEKQECPLCRTPNTHSSLVCLYHSDF 310
>gb|AAM64667.1| putative peroxisome assembly protein PER8 [Arabidopsis thaliana]
Length = 381
Score = 117 bits (292), Expect = 1e-25
Identities = 55/105 (52%), Positives = 67/105 (63%)
Frame = -3
Query: 589 SVTLTSYATHHTSAGHGLPVLNEEGTLASPDTDKGSWISESSSSEYHATTGVSKCTLCLS 410
S+ S ++ TS G GLPVLNEEG L + + +KG+W + S+S T V KCTLCLS
Sbjct: 277 SIQQASIGSYQTSGGRGLPVLNEEGNLITSEAEKGNWSTSDSTS----TEAVGKCTLCLS 332
Query: 409 NRPHPTATSCGHVFCWNCITEWCNEKSRVPSLPYPYNTLKSSLCV 275
R HPTAT CGHVFCW+CI EWCNE P P NT S +C+
Sbjct: 333 TRQHPTATPCGHVFCWSCIMEWCNENQECPLCRTP-NTHSSLVCL 376
Score = 51.6 bits (122), Expect = 8e-06
Identities = 22/41 (53%), Positives = 26/41 (62%)
Frame = -1
Query: 384 PVAMYFAGTVSQNGATKSPECPLCRTPITHSSLVCVYHSDF 262
P F + ++ ECPLCRTP THSSLVC+YHSDF
Sbjct: 341 PCGHVFCWSCIMEWCNENQECPLCRTPNTHSSLVCLYHSDF 381
>ref|XP_233729.1| similar to Peroxisome assembly protein 10 (Peroxin-10) [Rattus
norvegicus]
Length = 308
Score = 70.1 bits (170), Expect(2) = 3e-12
Identities = 29/49 (59%), Positives = 31/49 (63%)
Frame = -3
Query: 466 SSSEYHATTGVSKCTLCLSNRPHPTATSCGHVFCWNCITEWCNEKSRVP 320
SS E A CTLCL R H TAT CGH+FCW CITEWCN K+ P
Sbjct: 242 SSLEDRAVCRAPLCTLCLEERRHSTATPCGHLFCWECITEWCNTKTECP 290
Score = 22.7 bits (47), Expect(2) = 3e-12
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -1
Query: 327 ECPLCRTPITHSSLVCVYH 271
ECPLCR LV + H
Sbjct: 288 ECPLCREKFPPQKLVYLRH 306
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,509,023
Number of Sequences: 1393205
Number of extensions: 10385347
Number of successful extensions: 27064
Number of sequences better than 10.0: 605
Number of HSP's better than 10.0 without gapping: 25704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26983
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
