Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008030A_C01 KMC008030A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL32033.3|AF439274_1 WRKY-like drought-induced protein [Reta... 81 6e-15
sp|Q93WV0|WR20_ARATH Probable WRKY transcription factor 20 (WRKY... 65 4e-10
pir||T08930 hypothetical protein T15N24.90 - Arabidopsis thalian... 65 4e-10
ref|NP_567752.1| WRKY family transcription factor; protein id: A... 65 4e-10
gb|AAK76566.1| unknown protein [Arabidopsis thaliana] 65 4e-10
>gb|AAL32033.3|AF439274_1 WRKY-like drought-induced protein [Retama raetam]
Length = 488
Score = 81.3 bits (199), Expect = 6e-15
Identities = 41/61 (67%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Frame = -3
Query: 513 THPSTSNFKFVHTSPAPGYYGVLNNSSSSYGSRENRSDGPSLNH-SSYPCSQNMGRLLMG 337
T S SNFKFVHT+ P Y+GV + YGS ENRSDGPSLNH SSYPCSQN+GR+L G
Sbjct: 433 TQTSNSNFKFVHTTAGPVYFGV-----NPYGSIENRSDGPSLNHASSYPCSQNIGRILTG 487
Query: 336 P 334
P
Sbjct: 488 P 488
>sp|Q93WV0|WR20_ARATH Probable WRKY transcription factor 20 (WRKY DNA-binding protein 20)
gi|15991746|gb|AAL13050.1|AF425837_1 WRKY transcription
factor 20 [Arabidopsis thaliana]
Length = 557
Score = 65.5 bits (158), Expect = 4e-10
Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Frame = -3
Query: 513 THPSTSNFKFVHTSPAPGYYGVLNNSSSSYGSRENRS-----DGPSLNHSSYPCSQNMGR 349
THP+ NF+FVH SP YY LN+ + YG RE ++ D SLN+SSYP NMGR
Sbjct: 493 THPNGVNFRFVHASPMSSYYASLNSGMNQYGQRETKNETQNGDISSLNNSSYPYPPNMGR 552
Query: 348 LLMGP 334
+ GP
Sbjct: 553 VQSGP 557
>pir||T08930 hypothetical protein T15N24.90 - Arabidopsis thaliana
gi|4938502|emb|CAB43860.1| putative protein [Arabidopsis
thaliana] gi|7269516|emb|CAB79519.1| putative protein
[Arabidopsis thaliana]
Length = 571
Score = 65.5 bits (158), Expect = 4e-10
Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Frame = -3
Query: 513 THPSTSNFKFVHTSPAPGYYGVLNNSSSSYGSRENRS-----DGPSLNHSSYPCSQNMGR 349
THP+ NF+FVH SP YY LN+ + YG RE ++ D SLN+SSYP NMGR
Sbjct: 507 THPNGVNFRFVHASPMSSYYASLNSGMNQYGQRETKNETQNGDISSLNNSSYPYPPNMGR 566
Query: 348 LLMGP 334
+ GP
Sbjct: 567 VQSGP 571
>ref|NP_567752.1| WRKY family transcription factor; protein id: At4g26640.1,
supported by cDNA: gi_15028070 [Arabidopsis thaliana]
gi|23297473|gb|AAN12978.1| unknown protein [Arabidopsis
thaliana]
Length = 485
Score = 65.5 bits (158), Expect = 4e-10
Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Frame = -3
Query: 513 THPSTSNFKFVHTSPAPGYYGVLNNSSSSYGSRENRS-----DGPSLNHSSYPCSQNMGR 349
THP+ NF+FVH SP YY LN+ + YG RE ++ D SLN+SSYP NMGR
Sbjct: 421 THPNGVNFRFVHASPMSSYYASLNSGMNQYGQRETKNETQNGDISSLNNSSYPYPPNMGR 480
Query: 348 LLMGP 334
+ GP
Sbjct: 481 VQSGP 485
>gb|AAK76566.1| unknown protein [Arabidopsis thaliana]
Length = 485
Score = 65.5 bits (158), Expect = 4e-10
Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Frame = -3
Query: 513 THPSTSNFKFVHTSPAPGYYGVLNNSSSSYGSRENRS-----DGPSLNHSSYPCSQNMGR 349
THP+ NF+FVH SP YY LN+ + YG RE ++ D SLN+SSYP NMGR
Sbjct: 421 THPNGVNFRFVHASPMSSYYASLNSGMNQYGQRETKNETQNGDISSLNNSSYPYPPNMGR 480
Query: 348 LLMGP 334
+ GP
Sbjct: 481 VQSGP 485
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,449,304
Number of Sequences: 1393205
Number of extensions: 8875096
Number of successful extensions: 17213
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17200
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
