Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007982A_C01 KMC007982A_c01
(594 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO17031.1| Hypothetical protein [Oryza sativa (japonica cult... 239 4e-64
ref|NP_563620.1| hypothetical protein; protein id: At1g01220.1 [... 238 4e-62
pir||D86142 hypothetical protein F6F3.3 - Arabidopsis thaliana g... 238 4e-62
dbj|BAC33572.1| unnamed protein product [Mus musculus] 80 2e-14
ref|XP_226508.1| hypothetical protein XP_226508 [Rattus norvegicus] 80 3e-14
>gb|AAO17031.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1072
Score = 239 bits (611), Expect(2) = 4e-64
Identities = 119/146 (81%), Positives = 129/146 (87%)
Frame = -2
Query: 593 CTSSFPGIPLRLQVVPLLASPELISELQQRLLVVFTGQVRLAKKVLQKVVTRYIRRDNLL 414
CT SFPG PLRL VVPLLASP+LI ELQQRLLVVFTGQVRLA +VLQKVVTRY+RRD+LL
Sbjct: 903 CTQSFPGQPLRLHVVPLLASPQLIQELQQRLLVVFTGQVRLAHRVLQKVVTRYLRRDSLL 962
Query: 413 VSSIKRLVELAKIGREALMNCEIDEFGEIMLEAWRLHQELDPFCSNESVDRLFSFASPYC 234
+SSIKRL ELAKIGREALMN EIDE G IM EAWRLHQELDPFCSN+ VD LF+FA PYC
Sbjct: 963 ISSIKRLAELAKIGREALMNGEIDELGGIMSEAWRLHQELDPFCSNKLVDELFAFADPYC 1022
Query: 233 CGYKLVGAGGGGFALLLARDKQRAKE 156
CGYKLVGAGGGGFAL+L ++ AKE
Sbjct: 1023 CGYKLVGAGGGGFALMLGKNLNSAKE 1048
Score = 27.3 bits (59), Expect(2) = 4e-64
Identities = 8/24 (33%), Positives = 18/24 (74%)
Frame = -3
Query: 160 RNLRQRLQDEKHLEVKIYDWHISL 89
+ LRQ L++ +VK+Y+W++++
Sbjct: 1047 KELRQALENSATFDVKVYNWNVAM 1070
>ref|NP_563620.1| hypothetical protein; protein id: At1g01220.1 [Arabidopsis thaliana]
Length = 1055
Score = 238 bits (607), Expect = 4e-62
Identities = 115/145 (79%), Positives = 133/145 (91%)
Frame = -2
Query: 590 TSSFPGIPLRLQVVPLLASPELISELQQRLLVVFTGQVRLAKKVLQKVVTRYIRRDNLLV 411
TSSFPGIP+RLQVVPLLASP+LISEL+QRLLVVFTGQVRLA +VL KVVTRY++RDNLL+
Sbjct: 889 TSSFPGIPMRLQVVPLLASPQLISELEQRLLVVFTGQVRLAHQVLHKVVTRYLQRDNLLI 948
Query: 410 SSIKRLVELAKIGREALMNCEIDEFGEIMLEAWRLHQELDPFCSNESVDRLFSFASPYCC 231
SSIKRL ELAK GREALMNCE+DE G+IM EAWRLHQELDP+CSNE VD+LF F+ PY
Sbjct: 949 SSIKRLTELAKSGREALMNCEVDEVGDIMSEAWRLHQELDPYCSNEFVDKLFEFSQPYSS 1008
Query: 230 GYKLVGAGGGGFALLLARDKQRAKE 156
G+KLVGAGGGGF+L+LA+D ++AKE
Sbjct: 1009 GFKLVGAGGGGFSLILAKDAEKAKE 1033
>pir||D86142 hypothetical protein F6F3.3 - Arabidopsis thaliana
gi|9665149|gb|AAF97333.1|AC023628_14 Hypothetical protein
[Arabidopsis thaliana]
Length = 1113
Score = 238 bits (607), Expect = 4e-62
Identities = 115/145 (79%), Positives = 133/145 (91%)
Frame = -2
Query: 590 TSSFPGIPLRLQVVPLLASPELISELQQRLLVVFTGQVRLAKKVLQKVVTRYIRRDNLLV 411
TSSFPGIP+RLQVVPLLASP+LISEL+QRLLVVFTGQVRLA +VL KVVTRY++RDNLL+
Sbjct: 947 TSSFPGIPMRLQVVPLLASPQLISELEQRLLVVFTGQVRLAHQVLHKVVTRYLQRDNLLI 1006
Query: 410 SSIKRLVELAKIGREALMNCEIDEFGEIMLEAWRLHQELDPFCSNESVDRLFSFASPYCC 231
SSIKRL ELAK GREALMNCE+DE G+IM EAWRLHQELDP+CSNE VD+LF F+ PY
Sbjct: 1007 SSIKRLTELAKSGREALMNCEVDEVGDIMSEAWRLHQELDPYCSNEFVDKLFEFSQPYSS 1066
Query: 230 GYKLVGAGGGGFALLLARDKQRAKE 156
G+KLVGAGGGGF+L+LA+D ++AKE
Sbjct: 1067 GFKLVGAGGGGFSLILAKDAEKAKE 1091
>dbj|BAC33572.1| unnamed protein product [Mus musculus]
Length = 729
Score = 80.1 bits (196), Expect = 2e-14
Identities = 40/136 (29%), Positives = 72/136 (52%)
Frame = -2
Query: 572 IPLRLQVVPLLASPELISELQQRLLVVFTGQVRLAKKVLQKVVTRYIRRDNLLVSSIKRL 393
+PL+++V + + ++ LL+V+TG+ RLA+ +LQ V+ + R ++V + +RL
Sbjct: 543 LPLKVEVEEITVPEGFVQKINDHLLLVYTGKTRLARNLLQDVLRNWYARLPVVVQNARRL 602
Query: 392 VELAKIGREALMNCEIDEFGEIMLEAWRLHQELDPFCSNESVDRLFSFASPYCCGYKLVG 213
V + EA + G+ + W + + P C +V R+ +PY G L G
Sbjct: 603 VRQTEKCAEAFRQGNLPLLGQYLTSYWEQKKLMAPGCEPLAVQRMMDVLAPYAYGQSLAG 662
Query: 212 AGGGGFALLLARDKQR 165
AGGGGF LL ++ ++
Sbjct: 663 AGGGGFLYLLTKEPRQ 678
>ref|XP_226508.1| hypothetical protein XP_226508 [Rattus norvegicus]
Length = 1133
Score = 79.7 bits (195), Expect = 3e-14
Identities = 40/136 (29%), Positives = 71/136 (51%)
Frame = -2
Query: 572 IPLRLQVVPLLASPELISELQQRLLVVFTGQVRLAKKVLQKVVTRYIRRDNLLVSSIKRL 393
+PL+++V + + + LL+V+TG+ RLA+ +LQ V+ + R ++V + +RL
Sbjct: 947 LPLKVEVEEITVPENFVQRINDHLLLVYTGKTRLARNLLQDVLRNWYARLPVVVQNARRL 1006
Query: 392 VELAKIGREALMNCEIDEFGEIMLEAWRLHQELDPFCSNESVDRLFSFASPYCCGYKLVG 213
V + EA + G+ + W + + P C +V R+ +PY G L G
Sbjct: 1007 VRQTEKCAEAFRQGNLALLGQYLTSYWEQKKLMAPGCEPLAVHRMMDVLAPYAFGQSLAG 1066
Query: 212 AGGGGFALLLARDKQR 165
AGGGGF LL ++ ++
Sbjct: 1067 AGGGGFLYLLTKEPRQ 1082
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,976,802
Number of Sequences: 1393205
Number of extensions: 10940852
Number of successful extensions: 36835
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 34651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36760
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
