Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007953A_C01 KMC007953A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA09791.1| NDX1 homeobox protein [Lotus japonicus] 124 5e-28
emb|CAA09794.1| NDX1 homeobox protein [Glycine max] 87 1e-16
emb|CAA09792.1| NDX2 homeobox protein [Lotus japonicus] 69 2e-11
ref|NP_192218.1| NDX1 homeobox protein homolog; protein id: At4g... 47 2e-04
dbj|BAC37127.1| unnamed protein product [Mus musculus] 33 1.9
>emb|CAA09791.1| NDX1 homeobox protein [Lotus japonicus]
Length = 958
Score = 124 bits (312), Expect = 5e-28
Identities = 62/62 (100%), Positives = 62/62 (100%)
Frame = -2
Query: 510 WYAKSLEESETYVVDVIELKTDKETRVPYPSEATGTSFAEAASKLGVMRVLWSPRRIIAL 331
WYAKSLEESETYVVDVIELKTDKETRVPYPSEATGTSFAEAASKLGVMRVLWSPRRIIAL
Sbjct: 897 WYAKSLEESETYVVDVIELKTDKETRVPYPSEATGTSFAEAASKLGVMRVLWSPRRIIAL 956
Query: 330 QS 325
QS
Sbjct: 957 QS 958
>emb|CAA09794.1| NDX1 homeobox protein [Glycine max]
Length = 626
Score = 86.7 bits (213), Expect = 1e-16
Identities = 40/61 (65%), Positives = 47/61 (76%)
Frame = -2
Query: 510 WYAKSLEESETYVVDVIELKTDKETRVPYPSEATGTSFAEAASKLGVMRVLWSPRRIIAL 331
WY KSLEE +VVD+ ELK DK R+PYPSEATG +FAEA +KLGVMRVLW R+ AL
Sbjct: 564 WYGKSLEELSAHVVDISELKADKGMRLPYPSEATGNTFAEAETKLGVMRVLWGSNRVFAL 623
Query: 330 Q 328
+
Sbjct: 624 R 624
>emb|CAA09792.1| NDX2 homeobox protein [Lotus japonicus]
Length = 740
Score = 69.3 bits (168), Expect = 2e-11
Identities = 34/61 (55%), Positives = 42/61 (68%)
Frame = -2
Query: 510 WYAKSLEESETYVVDVIELKTDKETRVPYPSEATGTSFAEAASKLGVMRVLWSPRRIIAL 331
W+ SL+E VVDV ELK D + + YPSEATGT+FA+A KLGVMRVLW R+ L
Sbjct: 679 WHGMSLDEFAICVVDVYELKVDNGSWLLYPSEATGTTFADAEEKLGVMRVLWDLSRVFVL 738
Query: 330 Q 328
+
Sbjct: 739 R 739
>ref|NP_192218.1| NDX1 homeobox protein homolog; protein id: At4g03090.1 [Arabidopsis
thaliana] gi|7487652|pir||T01384 hypothetical protein
T4I9.3 - Arabidopsis thaliana gi|3924595|gb|AAC79096.1|
predicted protein of unknown function [Arabidopsis
thaliana] gi|7270179|emb|CAB77794.1| NDX1 homeobox
protein homolog [Arabidopsis thaliana]
Length = 925
Score = 46.6 bits (109), Expect = 2e-04
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = -2
Query: 510 WYAKSLEESETYVVDVIELKTD---KETRVPYPSEATGTSFAEAASKLGVMRVLWSPRRI 340
W SLE + VVDV+EL + +PY S+ G +F EA S+ GVMRV W ++
Sbjct: 864 WNGLSLETRQICVVDVMELSESYDGSKKMIPYGSDDVGRTFTEANSRFGVMRVAWDVNKL 923
>dbj|BAC37127.1| unnamed protein product [Mus musculus]
Length = 492
Score = 33.1 bits (74), Expect = 1.9
Identities = 19/53 (35%), Positives = 32/53 (59%)
Frame = -2
Query: 504 AKSLEESETYVVDVIELKTDKETRVPYPSEATGTSFAEAASKLGVMRVLWSPR 346
A+S++E ++ + E+K +K RV SE++GTS +A + G R+ SPR
Sbjct: 439 ARSMQE--VHIKTLEEIKLEKALRVQQSSESSGTSRPQAEAAPGTKRLSASPR 489
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 394,435,110
Number of Sequences: 1393205
Number of extensions: 7407512
Number of successful extensions: 14568
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14555
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
