>KMC007908A_C01 KMC007908A_c01
cagcaatgaggcataatgaccttattgaatgaacaggaatcatgttcacaacagaccgta
agagtttctggtcttccataTGTTCATGAATGAAAACCACAAAATCCAACTTGAGGTGGC
TAATAGGAATCTTCGACTCCGCAAAATTTTGACGGAAATTGAAAAGGTTGATGCCAAAAA
TTACTATCAATCCTGACAGCTGAGGATCGATACCCAGCCCGGAAAGAGGTAATGGCTACA
TGGGACAAAAAACTATTAGCCAAATGCTCATGAGAAAGAGATAGATGACTAATTGAAAAA
TAGTAGTCTGGGTATCGTGATGTTAGATAATGGAGTCACCAATAAATTAAACACAGATAC
TAATCCGAAAAGTGCAGGTCTTCTAACACAAACCCAGAACATAACCAGCAACTTTCAGGA
ATGAATTAATCTACACACTCTTCCTGGACTTGGCCATCAGCAAGATGGATGGCCAAGTTG
GCTTGGAGCATCAGCCTCAGAGTTGAAGTTCCTTAGAACATGACGGATCTGGAATGATAA
AAATTTATCCTTCAG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC007908A_C01 KMC007908A_c01
         (555 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T00638 hypothetical protein F3I6.1 - Arabidopsis thaliana g...    32  1.0
gb|AAO64815.1| At5g51080 [Arabidopsis thaliana]                        34  1.0
ref|NP_199921.1| putative protein; protein id: At5g51080.1 [Arab...    34  1.0
ref|NP_048298.1| ORF MSV227 leucine rich repeat gene family prot...    32  4.0
gb|AAK54296.1|AC034258_14 putative RNase [Oryza sativa (japonica...    32  4.0

>pir||T00638 hypothetical protein F3I6.1 - Arabidopsis thaliana
           gi|2829861|gb|AAC00569.1| Unknown protein [Arabidopsis
           thaliana]
          Length = 79

 Score = 31.6 bits (70), Expect(2) = 1.0
 Identities = 14/27 (51%), Positives = 20/27 (73%)
 Frame = -1

Query: 555 LKDKFLSFQIRHVLRNFNSEADAPSQL 475
           L +K +SF+I HVLRN N++AD  + L
Sbjct: 41  LCNKCVSFEISHVLRNLNADADEQANL 67

 Score = 21.9 bits (45), Expect(2) = 1.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 485 QANLAIHLADGQVQ 444
           QANLA+ L +G+V+
Sbjct: 64  QANLAVRLPEGEVE 77

>gb|AAO64815.1| At5g51080 [Arabidopsis thaliana]
          Length = 322

 Score = 34.3 bits (77), Expect = 1.0
 Identities = 15/27 (55%), Positives = 20/27 (73%)
 Frame = -1

Query: 555 LKDKFLSFQIRHVLRNFNSEADAPSQL 475
           L DK LSF+I HVLR+ NS+AD  + +
Sbjct: 284 LSDKCLSFEISHVLRSLNSDADEQANM 310

>ref|NP_199921.1| putative protein; protein id: At5g51080.1 [Arabidopsis thaliana]
           gi|8843844|dbj|BAA97370.1| contains similarity to RNase
           H~gene_id:MWD22.2 [Arabidopsis thaliana]
          Length = 316

 Score = 34.3 bits (77), Expect = 1.0
 Identities = 15/27 (55%), Positives = 20/27 (73%)
 Frame = -1

Query: 555 LKDKFLSFQIRHVLRNFNSEADAPSQL 475
           L DK LSF+I HVLR+ NS+AD  + +
Sbjct: 284 LSDKCLSFEISHVLRSLNSDADEQANM 310

>ref|NP_048298.1| ORF MSV227 leucine rich repeat gene family protein, similar to
           Amsacta moorei entomopoxvirus Q3 ORF SW:P28854
           [Melanoplus sanguinipes entomopoxvirus]
           gi|11362398|pir||T28388 ORF MSV227 leucine rich repeat
           gene family protein - Melanoplus sanguinipes
           entomopoxvirus gi|4049911|gb|AAC97871.1| ORF MSV227
           leucine rich repeat gene family protein, similar to
           Amsacta moorei entomopoxvirus Q3 ORF SW:P28854
           [Melanoplus sanguinipes entomopoxvirus]
          Length = 306

 Score = 32.3 bits (72), Expect = 4.0
 Identities = 16/49 (32%), Positives = 29/49 (58%), Gaps = 1/49 (2%)
 Frame = -3

Query: 172 INLFNFRQNFAES-KIPISHLKLDFVVFIHEHMEDQKLLRSVVNMIPVH 29
           IN  N ++NF +   +P+S  KL+F V ++  + D   L+ +VN+  +H
Sbjct: 80  INFVNIQKNFLKDVSLPLSLNKLEFNVIVNNELNDFTSLKILVNLKELH 128

>gb|AAK54296.1|AC034258_14 putative RNase [Oryza sativa (japonica cultivar-group)]
          Length = 289

 Score = 32.3 bits (72), Expect = 4.0
 Identities = 12/27 (44%), Positives = 20/27 (73%)
 Frame = -1

Query: 555 LKDKFLSFQIRHVLRNFNSEADAPSQL 475
           LK+ F+SF+I H+ R +N+EAD  + +
Sbjct: 247 LKENFVSFEINHIRREWNAEADRQANI 273

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,667,738
Number of Sequences: 1393205
Number of extensions: 9917998
Number of successful extensions: 21039
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 20575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21036
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MFB024h02_f BP035764 1 508 2 GNLf014c06 BP075610 155 556

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