Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007892A_C01 KMC007892A_c01
(467 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192451.1| UV-damaged DNA binding factor - like protein; p... 161 4e-39
dbj|BAB20761.1| UV-damaged DNA binding protein [Oryza sativa (ja... 157 5e-38
ref|NP_193842.1| UV-damaged DNA-binding protein- like; protein i... 156 9e-38
pir||T04941 UV-damaged DNA-binding protein homolog F7J7.40 - Ara... 99 2e-20
ref|NP_741992.1| damage-specific DNA binding protein 1 [Rattus n... 82 2e-15
>ref|NP_192451.1| UV-damaged DNA binding factor - like protein; protein id:
At4g05420.1 [Arabidopsis thaliana]
gi|25294328|pir||B85068 UV-damaged DNA binding
factor-like protein [imported] - Arabidopsis thaliana
gi|7267302|emb|CAB81084.1| UV-damaged DNA binding
factor-like protein [Arabidopsis thaliana]
gi|25054828|gb|AAN71904.1| putative UV-damaged DNA
binding factor [Arabidopsis thaliana]
Length = 1088
Score = 161 bits (407), Expect = 4e-39
Identities = 82/124 (66%), Positives = 92/124 (74%)
Frame = +3
Query: 96 MSEWNYVVTAHKPTKVTHSCVGNVTGPSRPQSHRRQMHPISSIHLLSPQEGLQLQLQLQS 275
MS WNYVVTAHKPT VTHSCVGN T P + I IHLL+PQ LQ
Sbjct: 1 MSSWNYVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIE-IHLLTPQG-------LQP 52
Query: 276 ILDVPIYGRIAILQLFRPHGEAQECLFVVTEKYKFCVLQWDRETHQLVTRAMGDVYDRIG 455
+LDVPIYGRIA L+LFRPHGEAQ+ LF+ TE+YKFCVLQWD E+ +L+TRAMGDV DRIG
Sbjct: 53 MLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDPESSELITRAMGDVSDRIG 112
Query: 456 RPTD 467
RPTD
Sbjct: 113 RPTD 116
>dbj|BAB20761.1| UV-damaged DNA binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 1090
Score = 157 bits (397), Expect = 5e-38
Identities = 80/124 (64%), Positives = 92/124 (73%)
Frame = +3
Query: 96 MSEWNYVVTAHKPTKVTHSCVGNVTGPSRPQSHRRQMHPISSIHLLSPQEGLQLQLQLQS 275
MS WNYVVTAHKPT VTHSCVGN TGP++ + I IHLL+PQ LQ
Sbjct: 1 MSVWNYVVTAHKPTSVTHSCVGNFTGPNQLNLIVAKCTRIE-IHLLTPQG-------LQP 52
Query: 276 ILDVPIYGRIAILQLFRPHGEAQECLFVVTEKYKFCVLQWDRETHQLVTRAMGDVYDRIG 455
++DVPIYGRIA L+LFRPH E Q+ LF+ TE+YKFCVLQWD E +L+TRAMGDV DRIG
Sbjct: 53 MIDVPIYGRIATLELFRPHNETQDFLFIATERYKFCVLQWDGEKSELLTRAMGDVSDRIG 112
Query: 456 RPTD 467
RPTD
Sbjct: 113 RPTD 116
>ref|NP_193842.1| UV-damaged DNA-binding protein- like; protein id: At4g21100.1
[Arabidopsis thaliana]
Length = 1088
Score = 156 bits (395), Expect = 9e-38
Identities = 81/124 (65%), Positives = 91/124 (73%)
Frame = +3
Query: 96 MSEWNYVVTAHKPTKVTHSCVGNVTGPSRPQSHRRQMHPISSIHLLSPQEGLQLQLQLQS 275
MS WNY VTA KPT VTHSCVGN T P + I IHLLSPQ LQ+
Sbjct: 1 MSVWNYAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRIE-IHLLSPQG-------LQT 52
Query: 276 ILDVPIYGRIAILQLFRPHGEAQECLFVVTEKYKFCVLQWDRETHQLVTRAMGDVYDRIG 455
ILDVP+YGRIA ++LFRPHGEAQ+ LFV TE+YKFCVLQWD E+ +L+TRAMGDV DRIG
Sbjct: 53 ILDVPLYGRIATMELFRPHGEAQDFLFVATERYKFCVLQWDYESSELITRAMGDVSDRIG 112
Query: 456 RPTD 467
RPTD
Sbjct: 113 RPTD 116
>pir||T04941 UV-damaged DNA-binding protein homolog F7J7.40 - Arabidopsis
thaliana gi|2911067|emb|CAA17529.1| UV-damaged
DNA-binding protein-like [Arabidopsis thaliana]
gi|7268907|emb|CAB79110.1| UV-damaged DNA-binding
protein-like [Arabidopsis thaliana]
Length = 1102
Score = 99.0 bits (245), Expect = 2e-20
Identities = 67/138 (48%), Positives = 76/138 (54%), Gaps = 14/138 (10%)
Frame = +3
Query: 96 MSEWNYVVTAHKPTKVTHSCVGNVTGPSRPQSHRRQMHPISSIHLLSPQEGLQLQLQLQS 275
MS WNY VTA KPT VTHSCVGN T P + I IHLLSPQ LQ+
Sbjct: 1 MSVWNYAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRI-EIHLLSPQ-------GLQT 52
Query: 276 ILDVPIYGRIAILQLFRPHGEAQECL---FVVTEKYK-FCVLQWD----------RETHQ 413
ILDVP+YGRIA ++LFRPH L + K+K FC+LQ
Sbjct: 53 ILDVPLYGRIATMELFRPHVSIVFLLNTFLCLRVKHKTFCLLQLKDINSVFFNGIMSPLS 112
Query: 414 LVTRAMGDVYDRIGRPTD 467
L+ AMGDV DRIGRPTD
Sbjct: 113 LLQGAMGDVSDRIGRPTD 130
>ref|NP_741992.1| damage-specific DNA binding protein 1 [Rattus norvegicus]
gi|9843869|emb|CAB89874.2| damage-specific DNA binding
protein 1 [Rattus norvegicus]
Length = 1140
Score = 82.4 bits (202), Expect = 2e-15
Identities = 46/128 (35%), Positives = 79/128 (60%), Gaps = 7/128 (5%)
Frame = +3
Query: 105 WNYVVTAHKPTKVTHSCVGNVTGPSR-----PQSHRRQMHPISSIHLLSPQEGLQLQLQL 269
+NYVVTA KPT V G+ T ++ R +++ +++ EGL+
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDINLLIAKNTRLEIYVVTA-------EGLR----- 50
Query: 270 QSILDVPIYGRIAILQLFRPHGEAQECLFVVTEKYKFCVLQWDR--ETHQLVTRAMGDVY 443
+ +V +YG+IA+++LFRP GE+++ LF++T KY C+L++ + E+ ++TRA G+V
Sbjct: 51 -PVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQ 109
Query: 444 DRIGRPTD 467
DRIGRP++
Sbjct: 110 DRIGRPSE 117
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,452,178
Number of Sequences: 1393205
Number of extensions: 9337341
Number of successful extensions: 66925
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 41042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59392
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
