Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007868A_C01 KMC007868A_c01
(578 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_710567.1| conserved hypothetical protein [Leptospira inte... 36 0.30
ref|NP_472055.1| conserved hypothetical protein [Listeria innocu... 36 0.30
gb|AAL11513.1|AF384863_1 myosin IIIA [Danio rerio] 28 1.3
ref|NP_654501.1| hypothetical protein predicted by GeneMark [Bac... 33 3.3
gb|EAA28610.1| hypothetical protein [Neurospora crassa] 33 3.3
>ref|NP_710567.1| conserved hypothetical protein [Leptospira interrogans serovar lai
str. 56601] gi|24193783|gb|AAN47585.1|AE011225_11
conserved hypothetical protein [Leptospira interrogans
serovar lai str. 56601]
Length = 741
Score = 36.2 bits (82), Expect = 0.30
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = -2
Query: 313 LVPMIFYIVLLGDFILIIEFMYSFSFIRFSQGVFSGKVLTRHVFSNLSLRRWW--VVVGF 140
L P+ FY+ L+G I+F+ S S + Q + S ++ T + + LR+ W + +GF
Sbjct: 273 LNPVPFYVFLIG-----IQFLVSISVLALGQALISYEIFTGRILPKIGLRQEWKKINLGF 327
Query: 139 LVV 131
L++
Sbjct: 328 LLI 330
>ref|NP_472055.1| conserved hypothetical protein [Listeria innocua]
gi|25373470|pir||AH1772 conserved hypothetical protein
lin2726 [imported] - Listeria innocua (strain Clip11262)
gi|16415262|emb|CAC97952.1| conserved hypothetical
protein [Listeria innocua]
Length = 362
Score = 36.2 bits (82), Expect = 0.30
Identities = 18/53 (33%), Positives = 30/53 (55%)
Frame = -1
Query: 176 SVSKEVVGGGGFFSGRRSSLLMLIVMLILLISFLLLPYLYWVEVPPYTSFNII 18
S SKEV+ G +S + SLLM+I L ++ +F+L + Y + + F I+
Sbjct: 222 SSSKEVLQGIPGYSEEQGSLLMMIAFLFVIAAFVLAAFFYVITIQKINQFGIL 274
>gb|AAL11513.1|AF384863_1 myosin IIIA [Danio rerio]
Length = 1775
Score = 28.1 bits (61), Expect(2) = 1.3
Identities = 11/29 (37%), Positives = 16/29 (54%)
Frame = +2
Query: 158 PPP*RQIREYMSR*NLTRKNPLGKPDEGK 244
PPP ++ E+ T +NP G+ DE K
Sbjct: 1383 PPPPEELMEFSEEMEFTEENPPGEEDEAK 1411
Score = 24.6 bits (52), Expect(2) = 1.3
Identities = 13/32 (40%), Positives = 19/32 (58%)
Frame = +1
Query: 76 RKEIKSISITINIKREDLLPLKNPPPPTTSLE 171
+KEIKS + E+ LP+ +PPPP +E
Sbjct: 1366 KKEIKSPT------DEEELPIPDPPPPEELME 1391
>ref|NP_654501.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
A2012]
Length = 167
Score = 32.7 bits (73), Expect = 3.3
Identities = 19/53 (35%), Positives = 32/53 (59%)
Frame = +2
Query: 215 NPLGKPDEGKRVHEFNNQDEVSKEDNIEYHRD*YSTIPAF*TIAFKNMKEAEN 373
NP G+ + K V +++++D +S ED + +T A+ I+FKN K+AEN
Sbjct: 77 NP-GEKTKEKFVRDYDSKDWISLEDATYVYDKTITTPMAYNVISFKNKKDAEN 128
>gb|EAA28610.1| hypothetical protein [Neurospora crassa]
Length = 428
Score = 32.7 bits (73), Expect = 3.3
Identities = 20/62 (32%), Positives = 33/62 (52%), Gaps = 3/62 (4%)
Frame = +1
Query: 49 STQYK*GKRRKEIKSISITINIKREDLLPLKNP---PPPTTSLETD*RIHVSLKPYQKKP 219
S+ + G R+E + +SI+ I E+ +NP PPP + +TD RI V +P+ +
Sbjct: 188 SSSQQGGSPRQESRPMSISNLISTENTRNKRNPVTLPPPPSGKKTDYRIFVRQQPFAARS 247
Query: 220 LG 225
G
Sbjct: 248 CG 249
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,983,370
Number of Sequences: 1393205
Number of extensions: 11094815
Number of successful extensions: 36920
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 32485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36855
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
