Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007865A_C01 KMC007865A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181476.1| hypothetical protein; protein id: At2g39440.1 [... 60 2e-08
gb|AAO65865.1| hypothetical protein [Oryza sativa (japonica cult... 58 9e-08
gb|AAM78103.1| AT3g53540/F4P12_240 [Arabidopsis thaliana] gi|233... 53 3e-06
ref|NP_190922.1| putative protein; protein id: At3g53540.1 [Arab... 53 3e-06
gb|AAK82439.1|AC091247_6 hypothetical protein [Oryza sativa] 37 0.13
>ref|NP_181476.1| hypothetical protein; protein id: At2g39440.1 [Arabidopsis
thaliana] gi|7485405|pir||T00554 hypothetical protein
At2g39440 [imported] - Arabidopsis thaliana
gi|3355473|gb|AAC27835.1| hypothetical protein
[Arabidopsis thaliana]
Length = 773
Score = 60.1 bits (144), Expect = 2e-08
Identities = 36/107 (33%), Positives = 61/107 (56%), Gaps = 2/107 (1%)
Frame = -3
Query: 514 VFHELEKRYCDWTTCSRSERRMLFDRINSGIFKIYEQSLCGKPWVGPATPDIGSQLTENG 335
+F +LEK+Y T+ RS+R++LFDR+NS + +I E W P + +G+ L+ G
Sbjct: 652 IFEKLEKKYYTETSWKRSDRKILFDRVNSSLVEILESFSATPTWKKPVSRRLGTALSTCG 711
Query: 334 LQDSIERLLGRQ-REVTDDILGKLLVME-SQWLDLGDDIDAHWQCKL 200
L+ + ++L RQ + L K+ V++ +WL+L D D C+L
Sbjct: 712 LKQELWKVLSRQEKRSKKKSLAKVPVIDIDEWLELEAD-DESVVCEL 757
>gb|AAO65865.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 617
Score = 57.8 bits (138), Expect = 9e-08
Identities = 39/116 (33%), Positives = 61/116 (51%), Gaps = 5/116 (4%)
Frame = -3
Query: 553 EVWNSLECPMSISVFHELEKRYCDWTTCSRSERRMLFDRINSGIFKIYEQSLCGKPWVGP 374
+V SL+CP VF +LEK+Y SRS+R+++FD +N+ + +I L PWV
Sbjct: 482 KVCQSLDCPAGYDVFEKLEKKYMKVAEWSRSDRKLIFDMVNTILSEILAPCLDMHPWVKS 541
Query: 373 A---TPDIGSQLTENGLQDSIERLLGRQREV--TDDILGKLLVMESQWLDLGDDID 221
A P GS+ GL + I ++L ++RE + ++ +W DL D ID
Sbjct: 542 ARKMAPVWGSE----GLLEKILQMLVQRREELGLSKTKPEKKALDRKWPDLSDCID 593
>gb|AAM78103.1| AT3g53540/F4P12_240 [Arabidopsis thaliana]
gi|23308447|gb|AAN18193.1| At3g53540/F4P12_240
[Arabidopsis thaliana]
Length = 554
Score = 52.8 bits (125), Expect = 3e-06
Identities = 34/105 (32%), Positives = 57/105 (53%), Gaps = 2/105 (1%)
Frame = -3
Query: 529 PMSISVFHELEKRYCDWTTCSRSERRMLFDRINSGIFKIYEQSLCGKPWVGPATPDIGSQ 350
P+ S+F +LEK+Y T +R ER++LFD+I+ + + +Q PWV + + +
Sbjct: 432 PVEPSLFEDLEKKYSSVKTSTRLERKLLFDQISREVLHMLKQLSDPHPWV--KSTKVCPK 489
Query: 349 LTENGLQDSIERLLGRQREVTD--DILGKLLVMESQWLDLGDDID 221
N +Q+++ L+ R+ E D+ K E QWL L DDI+
Sbjct: 490 WDANKIQETLRDLVTRKDEKPSKYDVEEK----ELQWLSLEDDIE 530
>ref|NP_190922.1| putative protein; protein id: At3g53540.1 [Arabidopsis thaliana]
gi|11357793|pir||T45894 hypothetical protein F4P12.240 -
Arabidopsis thaliana gi|6729505|emb|CAB67661.1| putative
protein [Arabidopsis thaliana]
Length = 932
Score = 52.8 bits (125), Expect = 3e-06
Identities = 34/105 (32%), Positives = 57/105 (53%), Gaps = 2/105 (1%)
Frame = -3
Query: 529 PMSISVFHELEKRYCDWTTCSRSERRMLFDRINSGIFKIYEQSLCGKPWVGPATPDIGSQ 350
P+ S+F +LEK+Y T +R ER++LFD+I+ + + +Q PWV + + +
Sbjct: 810 PVEPSLFEDLEKKYSSVKTSTRLERKLLFDQISREVLHMLKQLSDPHPWV--KSTKVCPK 867
Query: 349 LTENGLQDSIERLLGRQREVTD--DILGKLLVMESQWLDLGDDID 221
N +Q+++ L+ R+ E D+ K E QWL L DDI+
Sbjct: 868 WDANKIQETLRDLVTRKDEKPSKYDVEEK----ELQWLSLEDDIE 908
>gb|AAK82439.1|AC091247_6 hypothetical protein [Oryza sativa]
Length = 758
Score = 37.4 bits (85), Expect = 0.13
Identities = 27/109 (24%), Positives = 49/109 (44%)
Frame = -3
Query: 547 WNSLECPMSISVFHELEKRYCDWTTCSRSERRMLFDRINSGIFKIYEQSLCGKPWVGPAT 368
W S + VF +LE +Y T R +RR+LFD NS + +I + PW +
Sbjct: 622 WQSSGYLVGPHVFDKLEGKYSKVATWPRPQRRLLFDLANSVLSEILAPCIDTHPW-AKLS 680
Query: 367 PDIGSQLTENGLQDSIERLLGRQREVTDDILGKLLVMESQWLDLGDDID 221
+ G + + + + RQ+E +++ +WL+ G+ I+
Sbjct: 681 RNCCPVWGPEGPVEVVWQTMVRQQEELAVAHPDDKILDPEWLEFGEGIN 729
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,003,657
Number of Sequences: 1393205
Number of extensions: 10289010
Number of successful extensions: 24435
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 23698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24411
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
