Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007818A_C01 KMC007818A_c01
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568365.1| chromatin remodelling complex ATPase chain ISWI... 35 8e-04
gb|AAK53826.1|AC011806_3 Putative SWI/SNF related, matrix associ... 32 0.023
gb|AAF08585.1|AC011623_18 putative ATPase (ISW2-like) [Arabidops... 37 0.17
gb|AAM13851.1| putative ATPase (ISW2) [Arabidopsis thaliana] 37 0.17
ref|NP_187291.2| putative ATPase (ISW2-like); protein id: At3g06... 37 0.17
>ref|NP_568365.1| chromatin remodelling complex ATPase chain ISWI -like protein;
protein id: At5g18620.1, supported by cDNA: gi_14334971
[Arabidopsis thaliana] gi|14334972|gb|AAK59663.1|
putative chromatin remodelling complex ATPase chain ISWI
[Arabidopsis thaliana]
Length = 538
Score = 35.4 bits (80), Expect(2) = 8e-04
Identities = 17/23 (73%), Positives = 19/23 (81%)
Frame = -1
Query: 510 RERQARKEKELAKSMTPSKACCG 442
RERQARKEK+L+KS TPSK G
Sbjct: 489 RERQARKEKKLSKSATPSKRPSG 511
Score = 28.1 bits (61), Expect(2) = 8e-04
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3
Query: 418 LPKKRKQLTMDDYASPGKKKK 356
L KKRKQL+MDDY GK++K
Sbjct: 521 LLKKRKQLSMDDY---GKRRK 538
>gb|AAK53826.1|AC011806_3 Putative SWI/SNF related, matrix associated, actin dependent
regulator of chromatin [Oryza sativa]
gi|15528650|dbj|BAB64717.1| putative DNA-dependent ATPase
[Oryza sativa (japonica cultivar-group)]
gi|15528681|dbj|BAB64747.1| putative DNA-dependent ATPase
[Oryza sativa (japonica cultivar-group)]
Length = 1122
Score = 32.3 bits (72), Expect(2) = 0.023
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = -1
Query: 510 RERQARKEKELAKSMTPSK 454
+ERQARK+K +AK+MTP+K
Sbjct: 1067 QERQARKDKRMAKNMTPTK 1085
Score = 26.2 bits (56), Expect(2) = 0.023
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 412 KKRKQLTMDDYASPGKKKK 356
K+R+Q MDDY G++K+
Sbjct: 1103 KRRRQSLMDDYVGSGRRKR 1121
>gb|AAF08585.1|AC011623_18 putative ATPase (ISW2-like) [Arabidopsis thaliana]
Length = 1057
Score = 36.6 bits (83), Expect = 0.17
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = -1
Query: 510 RERQARKEKELAKSMTPSKACCG 442
RERQARKEK+LAKS TPSK G
Sbjct: 1016 RERQARKEKKLAKSATPSKRPLG 1038
>gb|AAM13851.1| putative ATPase (ISW2) [Arabidopsis thaliana]
Length = 1055
Score = 36.6 bits (83), Expect = 0.17
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = -1
Query: 510 RERQARKEKELAKSMTPSKACCG 442
RERQARKEK+LAKS TPSK G
Sbjct: 1014 RERQARKEKKLAKSATPSKRPLG 1036
>ref|NP_187291.2| putative ATPase (ISW2-like); protein id: At3g06400.1, supported by
cDNA: gi_20259461 [Arabidopsis thaliana]
Length = 1055
Score = 36.6 bits (83), Expect = 0.17
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = -1
Query: 510 RERQARKEKELAKSMTPSKACCG 442
RERQARKEK+LAKS TPSK G
Sbjct: 1014 RERQARKEKKLAKSATPSKRPLG 1036
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,535,573
Number of Sequences: 1393205
Number of extensions: 9112706
Number of successful extensions: 17132
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17127
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
