Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007805A_C01 KMC007805A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO64201.1| unknown protein [Arabidopsis thaliana] 125 4e-28
ref|NP_566936.1| expressed protein; protein id: At3g50600.1, sup... 125 4e-28
pir||T46091 hypothetical protein T20E23.200 - Arabidopsis thalia... 125 4e-28
gb|AAL18883.1|AF427166_1 nucleoprotein [Measles virus] 35 0.78
gb|AAK67698.1| nucleoprotein [Measles virus] gi|16417858|gb|AAL1... 35 0.78
>gb|AAO64201.1| unknown protein [Arabidopsis thaliana]
Length = 667
Score = 125 bits (313), Expect = 4e-28
Identities = 58/74 (78%), Positives = 69/74 (92%), Gaps = 2/74 (2%)
Frame = -2
Query: 548 QRGLTNKSIDPLEDPSPFCSATLSRLSSIGYEVCDLCGAEFSAVTAPGCIVCGMGSIKRS 369
QRG +NKSIDPLEDPS CSATLSRLS+IGY+VCDLCGA+F+A+++PGCI+CGMGSIKRS
Sbjct: 594 QRGTSNKSIDPLEDPSQLCSATLSRLSTIGYDVCDLCGAKFAALSSPGCIICGMGSIKRS 653
Query: 368 DAVAG--PVSSPFG 333
DA+AG PVS+PFG
Sbjct: 654 DALAGPAPVSTPFG 667
>ref|NP_566936.1| expressed protein; protein id: At3g50600.1, supported by cDNA:
gi_16604640 [Arabidopsis thaliana]
gi|16604641|gb|AAL24113.1| unknown protein [Arabidopsis
thaliana]
Length = 654
Score = 125 bits (313), Expect = 4e-28
Identities = 58/74 (78%), Positives = 69/74 (92%), Gaps = 2/74 (2%)
Frame = -2
Query: 548 QRGLTNKSIDPLEDPSPFCSATLSRLSSIGYEVCDLCGAEFSAVTAPGCIVCGMGSIKRS 369
QRG +NKSIDPLEDPS CSATLSRLS+IGY+VCDLCGA+F+A+++PGCI+CGMGSIKRS
Sbjct: 581 QRGTSNKSIDPLEDPSQLCSATLSRLSTIGYDVCDLCGAKFAALSSPGCIICGMGSIKRS 640
Query: 368 DAVAG--PVSSPFG 333
DA+AG PVS+PFG
Sbjct: 641 DALAGPAPVSTPFG 654
>pir||T46091 hypothetical protein T20E23.200 - Arabidopsis thaliana
gi|6562000|emb|CAB62489.1| hypothetical protein
[Arabidopsis thaliana]
Length = 852
Score = 125 bits (313), Expect = 4e-28
Identities = 58/74 (78%), Positives = 69/74 (92%), Gaps = 2/74 (2%)
Frame = -2
Query: 548 QRGLTNKSIDPLEDPSPFCSATLSRLSSIGYEVCDLCGAEFSAVTAPGCIVCGMGSIKRS 369
QRG +NKSIDPLEDPS CSATLSRLS+IGY+VCDLCGA+F+A+++PGCI+CGMGSIKRS
Sbjct: 779 QRGTSNKSIDPLEDPSQLCSATLSRLSTIGYDVCDLCGAKFAALSSPGCIICGMGSIKRS 838
Query: 368 DAVAG--PVSSPFG 333
DA+AG PVS+PFG
Sbjct: 839 DALAGPAPVSTPFG 852
>gb|AAL18883.1|AF427166_1 nucleoprotein [Measles virus]
Length = 151
Score = 34.7 bits (78), Expect = 0.78
Identities = 23/66 (34%), Positives = 32/66 (47%)
Frame = +1
Query: 325 ETQPNGEETGPATASDLLMLPIPQTMHPGAVTAENSAPQRSQTSYPMDESLLRVAEQNGE 504
ET+ N ETGP+ ASD +P + P TA + Q Q S ++LLR+ G
Sbjct: 72 ETRENSRETGPSRASDARAAHLPTSTPPDIDTASEYS-QEPQDSRRSADALLRLQAMAGI 130
Query: 505 GSSKGS 522
+GS
Sbjct: 131 LEEQGS 136
>gb|AAK67698.1| nucleoprotein [Measles virus] gi|16417858|gb|AAL18881.1|AF427164_1
nucleoprotein [Measles virus]
gi|16417860|gb|AAL18882.1|AF427165_1 nucleoprotein
[Measles virus] gi|19423718|gb|AAL88667.1|AF481495_1
nucleoprotein [Measles virus] gi|26515181|gb|AAN78215.1|
nucleoprotein [Measles virus]
gi|29335802|dbj|BAC65296.2| nucleoprotein [Measles
virus]
Length = 151
Score = 34.7 bits (78), Expect = 0.78
Identities = 23/66 (34%), Positives = 32/66 (47%)
Frame = +1
Query: 325 ETQPNGEETGPATASDLLMLPIPQTMHPGAVTAENSAPQRSQTSYPMDESLLRVAEQNGE 504
ET+ N ETGP+ ASD +P + P TA + Q Q S ++LLR+ G
Sbjct: 72 ETRENSRETGPSRASDARAAHLPTSTPPDIDTASEYS-QEPQDSRRSADALLRLQAMAGI 130
Query: 505 GSSKGS 522
+GS
Sbjct: 131 LEEQGS 136
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,062,691
Number of Sequences: 1393205
Number of extensions: 10452119
Number of successful extensions: 30235
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 28916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30216
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
